Pseudomonas simiae MEB105, RU03_RS22470
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain MEB105 contig_27, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGGAAACGATTTCCGTGGGGGTGGTGGACGCCGAAACCGCGCACAAGGCCGTTTCCCTGCGGGTGCTGACGGTGGACGACTCCTCGGTGGCGCGTAAAC AGGTGACCCGTTGCCTGCAGACCGTCGGCGTGGAGGTAGTGGCCCTCAACGACGGTCGCCAAGCGTTGGATTACCTGCGCAAGCTGGTGGACGACGGCAA GAAGCCGGAAGAAGAATTCTTGATGATGATCTCCGACATCGAGATGCCGGAAATGGACGGCTACACCCTCACGGCCGAGATACGCAACGATCCACGCATG CAAAAATTGCACATCATCCTGCATACTTCGTTGTCGGGGGTATTCAACCAGGCGATGGTCAAGAAGGTCGGTGCCGATGACTTCCTGGCCAAATTCCGTC CTGATGACCTGGCATCCCGGGTAGTCGACCGGATCAAGGCAGCAGATCACGGCTAGGGGGCATTTCCCCTGGCGGTCACACGATTTAAGAGGCGGTATCA
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| DNA Sequence for Gene |
>RU03_RS22470
TTGTCTACGGGTAATTTGGATTTCGAGCAGTTCCGGGTCTTCCTGGAAAAAGCCTGTGGCATATTGCTCGGTGAAAACAAGCAGTACCTGGTATCCAGCC GTCTCAACAAACTGATGGAGCAGCAGGGCATCAAGTCGTTGGGTGAGCTGGTTCAGCGCATCCAGGGGCAGCCGCGCAGCGGGCTCAAGGAGATGGTGGT CGATGCCATGACCACCAACGAAACCCTGTGGTTTCGTGACACCTACCCCTTTGAAGTGCTCAAGAACAAAGTGCTGCCGGAGGCTATCAAGGCCAGCCCG GGCCAGCGCCTGCGGATCTGGTCGGCCGCCTGCTCTTCGGGGCAGGAGCCCTACTCGATTTCGATGTCCATCGATGAGTTCGAGCGGACTAACATGGGCC AGTTGAAGGCCGGAGCGCAAATCGTCGCCACCGACCTCTCCGGCACCATGCTCACCAATTGCAAGACCGGCGAGTACGACAGTCTGGCCCTGGGCCGTGG TTTGTCCCAGGAACGCCTGCAACGTTACTTCGACCCGAAAGGGGCTGGGCGTTGGGCGGTCAAGGCGCCGATCAAGAACCGTGTGGAGTTTCGCTCGTTC AACCTGCTCGACAGCTACGCCAGCCTGGGCAAGTTCGACATGGTGTTCTGCCGCAACGTGCTGATCTACTTCTCGGCCGAAGTGAAGAAAGACATCCTGC TGCGCATCCATGGCACGCTCAAGCGCGGCGGCTATCTGTTCCTCGGCGCTTCGGAAGCGCTAAATGGTCTGCCGGACCATTATCAGATGGTGCAGTGCAG CCCTGGGATCATTTACCAGGCCAAATAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TACGCAAACCTAAATGTGGGAGCGGGCTTGCTCGCGAATAAGGTCTGTCAGTCATAGATAAGTTGACTGCTCCACCGCATTCGCGAGCAAGCCCGCTCCC ACATTTGTTTTGCGGCAACCCTCCCAATAGCGGCAACCCCCCATTGCCGCTTTACTGGCGCCACGCGGAAAGCGTTTGCCGCTTTTCTGGCATTGCCACC CGGCAATCTCCCCTCAAGCCCTTGATTTACTGGCCTTCAGTAGATTGGCATGCACCTTGCTATAACCCAGTTAACGAACAGCAGGTCAGCCCTTAAAGGT TTCCACCATGAGCATCAGCTTCGATAAAGCGCTCGGTATCCACGAACAAGCCCTGGGCTTCCGCGCCCAGCGTGCCGAAGTCCTGGCCAACAACATTGCC AACGCCGACACCCCGAACTACAAGGCTCGGGATTTGGACTTCTCCGCCGTGCTCGCTGCACAGCAGGACAAGACCAAGAACGGCACCTTCGCCTTGAACA
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| Amino Acid Sequence |
>chemotaxis protein CheR
MSTGNLDFEQFRVFLEKACGILLGENKQYLVSSRLNKLMEQQGIKSLGELVQRIQGQPRSGLKEMVVDAMTTNETLWFRDTYPFEVLKNKVLPEAIKASP GQRLRIWSAACSSGQEPYSISMSIDEFERTNMGQLKAGAQIVATDLSGTMLTNCKTGEYDSLALGRGLSQERLQRYFDPKGAGRWAVKAPIKNRVEFRSF NLLDSYASLGKFDMVFCRNVLIYFSAEVKKDILLRIHGTLKRGGYLFLGASEALNGLPDHYQMVQCSPGIIYQAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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