Pseudomonas simiae MEB105, RU03_RS18610
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain MEB105 contig_25, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTTCGAAGAGCTGGTGGAGCACAAGCTGGAGCAGCCGCACTTCATTACCCAGTACCCGTTCGAAGTGTCGCCGCTGGCCCGTCGCAACGACGACAACCCG AACGTCACCGATCGTTTCGAACTGTTCATCGGTGGTCGCGAGATCGCCAACGCCTACTCCGAGCTTAACGACGCGGAAGACCAGGCCGAGCGTTTCATGG CCCAGGTGGCCGACAAGGACGCCGGCGACGACGAAGCCATGCACTACGACGCTGACTTCGTCCGCGCCCTGGAATACGGCATGCCGCCAACGGCCGGTGA AGGTATCGGCATCGACCGTCTGGTGATGCTGTTGACCAACTCGCCGTCGATCCGCGACGTGATCTTGTTCCCGCACATGCGGCCGCAAGCGTAACCGAAG CGAAATCCGAAGCCGCCTTTTATAAGGCGGCTTTTTTATGTGGCGTCAATAAGCGTCAAGCAAACAGCGCCAGGTTTTGATCTATTCAAGGATGTGAGTC
|
|
| DNA Sequence for Gene |
>RU03_RS18610
GTGAACCGCGTAACCGCTCAAGAAGGCGCCGCCGGCATTGCCGCTGCCGTGGCTGAAAGCGTCCAGTACCAGGGCCGCAAGGCCAGCCGTCGGGGTAGCG AGCAACGCAGGCAAGACATTCTCGATGCAGCCATGCGCATCGTAGTGCGCGATGGCGTGCGCGCCGTGCGCCATCGCGCGGTGGCGGCGGAGGCGGGGGT GCCCTTATCGGCCACCACCTACTATTTCAAGGACATCGACGATCTGCTCACCGACACTTTCGCCCAATACGTCGAGCGCAGTGCAGCGTTCATGGGCAAA CTGTGGGTGCGTAACGAAGGCCTTTTGCGCGAGATGGTCGCCTATGGCGATGGCAGCCCGCAGTCACGCTCGCAACTGGCCGATGACATTGCGCGGCTGA CCGCCGATTACGTCTTGCGGCAACTGACCAACCGTCGTGAACACCTGATGGCCGAGCAGGCGTTCCGCCAGGAAGCCTTGCTCAACCCGCGCCTGGCCGA GTTGGTGCGTTCCCACCAGCAGATTCTGTTGCAAGGCACCGGGCAGTTTTTCCAGGTGTTGGGCTCCCGCGAGCCACAACAGGATGCCAAAGTGTTGACG GCGATAATCAGTCGGATGGAATATCAGGGCCTGCTGGGCGGCGCAGAGCCTCTGACCGGTGAAGAAATGCTTGAGATCCTCAAGCGTTACATGCATTTGG TCTTGGCCTCGGTGTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCATTTACGGAACGTGCTTTATGTGGGAGCGGGCTTGCTCGCGAATGCGCGGTGTCAGTCGATACACATTTGGCTGAGCCACCGCTTTCGCGAGCAAGCC CGCTCCCACACAAAACGGTTCCACCCATACCCCCGTGGAGTACTCGATGAAAGCCTGGCGAATCGCGGTAATTGCCTTGTCATTCCTGCTGCTCAGCGGC TGCCTGGTGACCTTCAAGGACCCGATGCCGGCCCGTGAAGCCGCACCCGCGGGCTTGCTGGGGAAATGGTCGAGCAAAAACGCCTGGGGCGAGCCGCTCA ACCTGCGAATCACGCGCGTCGGTGAACACCGTTATAAAGCCGTGAGCTACCCTACAGCCAAGCCGAACCAGCGTGATGAGTACTTGTTTACTGTGTCCCG GCATGGCAACCGCTGGTACTTGTCGGCGCCGCTGCCGGCCAAGCTCGGCGGGCATTTCATCCTTGCGGGCTTCGAAATCAACGAAAAGCATGAATTGGTG
|
|
| Amino Acid Sequence |
>TetR family transcriptional regulator
MNRVTAQEGAAGIAAAVAESVQYQGRKASRRGSEQRRQDILDAAMRIVVRDGVRAVRHRAVAAEAGVPLSATTYYFKDIDDLLTDTFAQYVERSAAFMGK LWVRNEGLLREMVAYGDGSPQSRSQLADDIARLTADYVLRQLTNRREHLMAEQAFRQEALLNPRLAELVRSHQQILLQGTGQFFQVLGSREPQQDAKVLT AIISRMEYQGLLGGAEPLTGEEMLEILKRYMHLVLASV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|