Pseudomonas simiae MEB105, RU03_RS17505
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain MEB105 contig_25, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CATCAAAAATGGTCACGGACCTGATCGAAGCGCAGAAGAGAACCGGAATAGACGCTTCGCGAATTTTCCTCGCCGGTTTTTCCCAGGGCGGCGCCGTGGT TTTCCACACCGCATTCCTGAACTGGGAAGGTCCCTTGGGTGGCGTGATCGCCCTCTCCACCTATGCCCCTACGTTCAGCGACGAGCTGGAATTATCAGCC AGCCAACAGCGCATTCCCGCCCTGTGCCTGCACGGCCAGTACGACGATGTGGTACAGAACGCCATGGGCCGCAGCGCTTACGAGCATTTGAAAACCCGTG GTGTCACCGTGACATGGCAGGAATACCCAATGGGCCACGAAGTGTTACCCGAGGAGATACGCGATATCGGTGCCTGGTTGACCGTTCGCCTGGGCTGAAA ACCACAGTTTATGTAGCTGTATGACAGACGCACTACGCCGCGCCCGATTCTTGCATTACACTGGCCGGCGTACATTCCTTAACCAATTAATGAGATCACC
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| DNA Sequence for Gene |
>RU03_RS17505
GTGCTCAAAGCACTCAAGAAGATGTTCGGCAAAAGCGAGGCTGAGCCGCTCGCGCCTGATTCCAGTGCTCCTGCTCCGACAGCCGGTAGCCGCAATGACG GCAAACAGCCCGCACGGCACGCACCTGCTGCCCAGCCAAAGAAGCCAACGGTGACACCGCCTGAACAGGCAAAGCCGGTTGAACCCGCTGCCGCGCCAGT GGCGCCGAAGCCACGTCGCGAACGTGCGCCAACGCCGCCGGTGATCCCATGGAAACTCGAAGACTTCGTCGTCGAGCCGCAGGAAGGCAAGACGCGCTTC CACGATTTCAAATTGGCGCCTGAACTGATGCACGCCATCCAGGACCTGGGATTCCCGTACTGCACACCGATCCAAGCGCAGGTGCTGGGCTTCACCCTGG CCGGCAAAGACGCCATCGGTCGCGCACAGACCGGCACCGGCAAGACCGCCGCGTTCCTGATCTCGATCATTACCCAGTTGCTGCAGACGCCGCCGCCGAA AGAACGCTACATGGGTGAGCCGCGCGCGCTGATCATCGCCCCGACCCGGGAGCTGGTGGTACAGATTGCCAAGGACGCCGCAGACCTGACCAAGTACACC GGCCTTAACGTAATGACGTTCGTCGGCGGCATGGACTTCGATAAACAGCTCAAGCACCTCGAAGCCCGTCACTGCGACATTCTGGTAGCCACGCCGGGCC GACTGCTGGACTTCAACCAGCGCGGCGACGTGCACCTGGACATGGTAGAAGTGATGGTACTGGACGAAGCCGACCGCATGCTCGACATGGGTTTCATCCC ACAAGTGCGTCAGATCATTCGCCAGACCCCGCCGAAATCCGAGCGTCAGACCCTGCTGTTCTCCGCGACCTTCACCGAGGACGTGATGAACCTCGCCAAG CAGTGGACCACCGACCCGTCCATCGTCGAGATCGAAGCGGAAAACGTCGCCAGCGAGAACGTCGAGCAACACATCTATGCCGTGGCCGGTGCCGACAAGT ACAAGCTGCTCTACAACCTGGTCAACGACAACGGTTGGGAGCGCGTGATGGTGTTTGCCAACCGCAAGGACGAAGTGCGCCGCATCGAAGAACGCCTGGT GCGTGACGGCGTCAACGCTGCGCAACTGTCGGGCGATGTGCCACAGCACAAGCGCATCAAGACCCTCGAAGGCTTCCGCGAAGGCAAGATCCGCGTGCTG GTGGCCACCGACGTGGCCGGTCGCGGGATTCACATCGATGGCATCAGCCATGTGATCAACTTCACCCTGCCGGAAGTGCCGGACGATTACGTACACCGTA TCGGCCGTACCGGTCGTGCCGGGGCGGCGGGTGTATCGATCAGCTTTGCCGGGGAAGATGACTCGTATCAGTTGCCGTCGATCGAGACGCTGCTGGGGCG CAAGATCAGCTGTGAAACGCCGCCGACGCACCTGTTGCGCCCTGTCGAGCGCAAACGCCCGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCTGAACCAAGGACGAAGAAGCAGGGCTTTATGTACCTGCTTTTTTGTCCACTATTTCCTGCGGAGCGACATCGCCGCAACGCTTTCCACGTTGCTGAT GTGTTTGAATCACCCTTACCGTTGTGGTGCCGCCTGGTAAAGCTCACTCAGGATCGGCTGACGAATACGTAAAGCCTCCTCCCTGAACGCCTGATAAAAC CGGTTTGCGGTGTCTGGCATGTCGGCGATGTGCGCCAGCTCCGAACGTGATTGCGACTGCGCCTCACGTCTTTCCCCCTTAGTCGCGTCGTCCACTTCGG AAGGGGAGTCGAGAGCGTCGTAACGCGCCACCAACGAGCGCATCAAATTAGCCGTTCTGACAAATGCTCGTGTGGAACCGAACGCCTTACTGCTAGTGGT CACCGCTTTACCGAATTTAAAGGTTCGACCCAAGATTAATTTGCTCCCACTCCTCAGCGCCTCACGCAGTGGGACGTCGACAACAAAACCAGCTGTGTTC
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| Amino Acid Sequence |
>RNA helicase
MLKALKKMFGKSEAEPLAPDSSAPAPTAGSRNDGKQPARHAPAAQPKKPTVTPPEQAKPVEPAAAPVAPKPRRERAPTPPVIPWKLEDFVVEPQEGKTRF HDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYT GLNVMTFVGGMDFDKQLKHLEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTEDVMNLAK QWTTDPSIVEIEAENVASENVEQHIYAVAGADKYKLLYNLVNDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVL VATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQLPSIETLLGRKISCETPPTHLLRPVERKRP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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