Pseudomonas simiae MEB105, RU03_RS16680
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain MEB105 contig_25, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CATGCAGGCGGACCTGGCGCAGATCGGCCTGAAGGTGAATATCAAAGTCATGGAATGGGGCGAAATGCTCAAGCGTGCTAAAAACGGCGAGCACGACATG GTTTCGGCTGGGTGGGTGGGTGATAACGGCGACCCGGACAATTTCCTGACCCCGAACCTGAGTTGCGATGCAGCGAAAAACGGCGAAAACTACGCCCGCT GGTGTAACAAAGAGTTTCAAGACTTGATCGACAAAGCTCGCGCCATCGCTGAACCCGCCCAGCGCGCTGCACTCTATGAACAAGCACAGGACGTTTTCGA TAAGGACCAACCATGGCTTCCCATGGCTTACCCGAAACTGTTCACCGCCATGCGCAAGAACGTAGAAGGCTTCACCCAAAGCCCTCTGGGTACAAATAAC TTCGCCACCACCCAGGTGAAGTAAATAAGAAAAACGCTCGGCGCCGTCGCTATTGACGGCGCCGGACCTGCCTAACCGGCTGATTGAGGTACACGACAAG
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| DNA Sequence for Gene |
>RU03_RS16680
ATGTTTAGTTTTATTGCCCGCCGACTGGGGTTATTGATCCCCACGTTTTTCGGCATAACGTTGCTCACGTTTGCGTTGATTCGCATGATCCCTGGCGACC CCGTCGAAGTCATGATGGGCGAGCGGCGCGTCGACCCCGAGATGCACGCACAGGCAATGGAACGCCTTGGTCTTAACAAGCCGCTGTATGCGCAATACCT GGATTACGTCGGCAAACTGGCCCAGGGTGACCTTGGCGAATCGCTGCGTACCCGCACCAGCGTGTGGACTGAATTCACCGCCCTCTTCCCGGCGACCCTG GAACTGTCCATGGCCGCCCTGTTGTTCGCCGGTATCCTGGGCCTGTTGGCCGGGGTGATCGCGGCGCTTAAACGAGGATCCCTGTTCGACCATGGGGTGA TGGGCATCTCCCTCGCGGGATACTCGATGCCGATCTTCTGGTGGGGCCTGATCCTGATCATGTTCTTCTCGGTCAGCCTGGGCTGGACCCCGGTGTCCGG GCGTATCGACCTGCTTTACGACATCGAGCCGCGCACCGGCTTCATGCTGATCGACACCCTGCTGGCTGACGAGCCGGACGCGTTCTGGGATGCCCTGCAC CACCTGATCCTGCCGGCCATCGTGCTCGGTACCATTCCGCTGGCGGTGATCGCACGGATGACCCGTTCGTCGATGCTCGAAGTGCTGCGCGAAGACTACA TCCGCACCGCCAAGGCCAAAGGCCTGTCGCCGGCGCGCGTGGTGTTCGTGCACGGCCTGCGTAACGCACTGATCCCGGTATTGACCGTGGTCGGCCTGCA AGTCGGCACGCTGTTGGCCGGTGCGGTATTGACCGAAACCATCTTCTCCTGGCCCGGCATCGGCAAATGGCTGATCGAAGCCATTGGCGCGCGGGACTAC CCGGTGGTGCAGAACGGCATCCTGTTGATCGCCTGCCTGGTGATCCTGGTGAACTTCGTGGTGGATATCCTCTACGGCTTCGCCAACCCACGCATCCGTC ACCAGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GATCATGACCATGACCACACCTACTCCAGTGTCAGCAGTCGATCAAAGCCTGCTGTACCCGTCTCCGTACAAAGAATTCTGGCAAGCCTTTTCCAAGAAC AAAGGCGCGGTTGCCGGCCTGCTGTTCATGTTGCTGATCGTGTTCTGCGCGATCTTTGCCCCGTGGGTTGCGCCGCATAACCCGAGCGAGCAATACCGCG ACTTCCTGCTGACCCCGCCAGCCTGGCTGGAAGGTGGGCAGATGCAATTCCTGCTGGGCACCGACGAACTGGGCCGTGATTTGCTCTCGCGCCTGATCCA GGGCTCGCGCCTGTCCTTGCTGATCGGTTTGTCGTCGGTGGTAATGTCGCTGATCCCGGGGATCCTGCTGGGTCTGTTCGCCGGGTTCTTCCCGCGCTTG CTCGGCCCGACCATCATGCGCTTGATGGACATCATGCTGGCCCTGCCGTCGCTGCTGCTGGCTGTAGCCATTGTCGCGATCCTCGGCCCTGGCCTGATCA
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| Amino Acid Sequence |
>peptide ABC transporter permease
MFSFIARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMMGERRVDPEMHAQAMERLGLNKPLYAQYLDYVGKLAQGDLGESLRTRTSVWTEFTALFPATL ELSMAALLFAGILGLLAGVIAALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPRTGFMLIDTLLADEPDAFWDALH HLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTAKAKGLSPARVVFVHGLRNALIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARDY PVVQNGILLIACLVILVNFVVDILYGFANPRIRHQR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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