Pseudomonas simiae MEB105, RU03_RS13480
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain MEB105 contig_17, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATCCAGCAGATCGCTGCACCGCGCACCTTGTATGAAGAACCGAAGAACACCTTTGTCGCCAACTTTATCGGCGAGAACAACCGCCTCAATGGCCGCCTG CACAGCCATAGCGGCGAGCGCTGCGTGGTGGAGCTGGCGCGTGGCGAGAAGGTCGAGGCGCTGGCGGTCAACGTCGGCCAGGTGGGTGGCCCGGTGACGC TGTCGGTACGCCCTGAACGCGTCAGCCTCAATGGCTCCAGCGAATCTTGCGTCAACCGCTTTTCCGGGCGGGTGGCGGAATTCATCTACCTGGGCGACCA CGTACGTGTGCGCCTGGAAGTCTGCGGCAAGGCCGATTTTTTTGTGAAACAACCGATTGCCGAGCTGGATCCAGCCCTGGCGGTCGGCGACGTGGTACCG ATTGGCTGGCAAGTCGAGCACGTTCGCGCACTCGACCCACTTTTAGAGGCGAATTGATCGCCCCCTGGCTTCACCAACCCTGCACGTGGAGAGAACAACA
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| DNA Sequence for Gene |
>RU03_RS13480
ATGTTGAGTTCCTTGAAGTATTCCGTTTTGGCATTGAGCTTGATGGGTGCGACACAGGCCATGGCAGGCCCGGATCTGACGGTCGTGTCCTTTGGCGGCG CGAACAAGGCGGCCCAGGTCAAGGCCTTCTATGCACCGTGGGAAAGCGCGGGCAACGGCAAGATCGTCGCCGGCGAGTACAACGGTGAAATGGCCAAGGT CAAAGCCATGGTCGACACCAAGAGCGTGTCCTGGGACCTGGTGGAAGTGGAGTCGCCGGAACTGTCCCGCGGCTGCGATGAAGACATGTTCGAGCCCCTG GATCCGAAACTGTTCGGCAACACGGCTGACTACGTGAAGGGTGCGATCCAGCCGTGTGGCGTGGGCTTCTTCGTGTGGTCGACGGTGCTCGCCTACAACG CCGACAAGCTGGCATCCGCGCCAACCAGCTGGGCGGATTTCTGGGACACCAAGAAATTCCCTGGCAAGCGTGGCCTGCGCAAAGGCGCCAAGTACACCCT GGAATTCGCCTTGATGGCTGACGGCGTTGCACCGAAAGACGTGTACAAAGTGCTGGCCGGCAAAGACGGCCAGGACCGCGCGTTCAAGAAGCTCGACGAG CTCAAGCCGTCGATCCAGTGGTGGGAAGCCGGCGCACAACCGCCGCAGTACCTGGCCTCGGGTGACGTGGTGATGAGCTCGGCGTACAACGGCCGCATTG CCGCCGTGCAGAAAGAAAGCAACCTGAAAGTGGTGTGGAACGGCGGCATCTACGACTTCGACGCCTGGGCCATCCCTAAAGGCCTGGCCAAGGATCGTGC CGAAGCGGCGAAAAAATTCATCGCCTTCTCGGTGCAGCCACAGCAACAGAAGACCTACTCGGAAAACATCGCCTACGGCCCGGCCAATACCCAAGCCGTA CCGTTGCTGGCCAAGGACGTACTGAAGGACATGCCGACCACTCCGGAAAACATCGCCAACCAGGTGCAGATCGATGTGAGCTTCTGGGCGGATAACGGCG AGCAGCTGGAGCAGCGCTTCAATTCCTGGGCTGCCAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CACTGCATTTCCCTGTGGGAGGGGGCTTGCCCCCGATGACGGCGGTCCAGTCGATATATGTGTTGACTGAAAGTCTGCCATCGGGGGCAAGCCCCCTCCC ACAAGGGATTTCTTGTGTGTGAAAGGTTGCATTCATTTTCAAGATTCGGAGTCAGCCATGGCCATCGCCGTTCCCTCGAACGAGGTCAGCAGCCCCACCC TCAAGCAGCGCCTGGCGCGTGCCGAGCGGCTCAACCGCTGGAAGGCCCAGGCCTTGATTGCGCCGCTGGTGCTGTTCTTGCTGCTGGTGTTCCTGGTGCC GATTGTGGCGCTGTTGTTCAAAAGCGTCGGCAACCCGGAAGTGGTAGGCGGTTTGCCGCGTACCGTGGTGGCGGTGACGGCCTGGGATGGCCGGGGCCTG CCGGGCGAGCCGGTGTACCAGGCCCTCAGTGAGGACTTGAGCGAAGCCCGCCAAAACCAGACGTTGGGCGATCTGTCCAAGCGCTTGAACATGGAACTGG
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| Amino Acid Sequence |
>spermidine/putrescine ABC transporter substrate-binding protein
MLSSLKYSVLALSLMGATQAMAGPDLTVVSFGGANKAAQVKAFYAPWESAGNGKIVAGEYNGEMAKVKAMVDTKSVSWDLVEVESPELSRGCDEDMFEPL DPKLFGNTADYVKGAIQPCGVGFFVWSTVLAYNADKLASAPTSWADFWDTKKFPGKRGLRKGAKYTLEFALMADGVAPKDVYKVLAGKDGQDRAFKKLDE LKPSIQWWEAGAQPPQYLASGDVVMSSAYNGRIAAVQKESNLKVVWNGGIYDFDAWAIPKGLAKDRAEAAKKFIAFSVQPQQQKTYSENIAYGPANTQAV PLLAKDVLKDMPTTPENIANQVQIDVSFWADNGEQLEQRFNSWAAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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