Pseudomonas simiae MEB105, RU03_RS10460
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain MEB105 contig_15, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAAAGACGCTGCCGTCGCCAAGGAAGAAACCTTTGGTCCGCTGGCACCGCTGTTCCGCTTCAAGGACGAAGCCGAAGTGATCGCGATGTCCAACGACAC CGAGTTCGGCCTGGCCTCTTATTTCTATGCCCGCGACCTGGGCCGTGTGTTCCGTGTGGCTGAAGCCCTGGAATACGGCATGGTCGGCGTCAACACCGGG TTGATCTCCAACGAAGTGGCGCCGTTCGGCGGTATCAAGGCTTCGGGCCTGGGCCGTGAAGGTTCCAAATACGGGATCGAGGATTACCTGGAAATCAAAT ACCTCTGCCTGGGCATCTGACCAGCACGAGTTTGCCGCAAACGCAGAGGGCACGAGAGCGCTGTCCCTTTGCGTGTTTCACCGCGTAATTCGTAGTGGCC GGGAAAGCTGTGGCAGTCGATCATCGCATGCTGCCGTAGTTGCCTCCCCGCCACGTATTCCTTGGACCACGCCACCCGATGAGTGGCGAATGAGGACTTT
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| DNA Sequence for Gene |
>RU03_RS10460
ATGAGCAAGACCAACGCATCCCTGATGAAGCGCCGCGAAGCCGCTGTACCACGCGGTGTTGGCCAGATTCACCCGATCTTCGCCGAATCCGCGAAGAACG CCACCGTGACCGACGTTGAAGGTCGCGAGTTCATCGACTTCGCCGGCGGTATCGCCGTGCTGAACACCGGCCACGTGCACCCGAAAATCATCGCGGCCGT GACCGAGCAACTGAACAAGCTGACTCACACCTGCTTCCAGGTCCTGGCCTACGAGCCTTACGTGGAGCTGTGCGAGAAAATCAACGCCAAGGTCCCAGGT GATTTCGCCAAGAAAACCCTGCTGGTCACCACCGGTTCCGAAGCTGTCGAAAACGCCGTGAAAATCGCCCGTGCTGCCACCGGCCGTGCTGGCGTGATCG CCTTCACCGGGGCCTACCACGGCCGCACCATGATGACCCTGGGCCTCACCGGTAAAGTTGTGCCTTACTCGGCAGGCATGGGCCTGATGCCAGGTGGCGT GTTCCGCGCGCTGTTCCCGAACGAACTGCACGGTGTGAGCGACGACGACGCCATCGCCAGCATCAAACGCATCTTCAAGAACGATGCCGAGCCGCGTGAC ATCGCCGCCATCATCATCGAACCGGTGCAGGGTGAAGGCGGTTTCTACGTCGCGCCCAAATCCTTCATGAAGCGCCTGCGCGAACTGTGCGACAAGCACG GCATCCTGCTGATCGCCGACGAAGTGCAAACCGGTGCCGGCCGTACCGGCACCTTCTTCGCCATGGAGCAGATGGGCGTTGCTGCCGACCTGACCACCTT CGCCAAATCCATCGCTGGCGGTTTCCCGCTGGCCGGTGTGTGCGGCAAGGCCGAGTACATGGACGCTATCGCGCCAGGCGGCCTGGGCGGCACCTACGCG GGTAGCCCGATCGCCTGCGCTGCGGCCCTGGCCGTGATGGAAGTGTTCGAAGAAGAGCACCTGCTGGACCGCTGCAAGGCTGTCGGCGAGCGTCTGGTGA CCGGTCTGAAAGCGATCCAGGCCAAGTACCCGGTGATCGGCGAAGTGCGCGCTCTGGGCGCAATGATCGCGGTTGAGCTGTTTGACGACGGCGACACCCA TAAGCCAAACGCCGCTGCCGTTGCCTCCGTGGTGGCCAAGGCGCGTGAAAAGGGCCTGATCCTGTTGAGCTGCGGCACCTACGGCAACGTGTTGCGCGTA CTGGTCCCGCTGACCTCGCCGGACGAGCAGTTGGACAAAGGCCTGGCGATCATCGAAGAGTGCTTCTCCGAGCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGAAATTGACCTGATCGACAGAAAAAACCCGCTTCGGCGGGTTTTTTTATGCCCATTGCCGCACATTCAGGCCGTGTTCATTGTACCTGGGCGTCTGC ATTGTCTAAGGTTGCAGCATTGCCGATGGAGCGTGCTGGATGACTGCTGTTGATTTACCCGCTGTACCCCGCGTGTTGATTGCCGAGGCGGACCCCTGGT CGCGGGACCTGCTCAAGCAGGTGTTGTTGAATGTGCGCTGCGACGCGCGGCTGGATGTGTGTGCCGATGGGCAGCACGCGGTGACGTTGCTGCGAGAAAA AAACTACGATCTGATCCTGGCCGATTGGGAGCTTCCGGGCGTCGATGGTCTGAGCCTGCTGCGCAACGTGCGCCAGCAGCGCCGCTCGCCCGCGTTGCCG TTCATTCTGCTGAGCAGCCGCAATGACAGCGCCAGCGTGCGCGAAGCCTTGCCCCTGGCGCCTACGGCGTACCTGACCAAACCGCTGAACATGGAGGGCC
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| Amino Acid Sequence |
>4-aminobutyrate aminotransferase
MSKTNASLMKRREAAVPRGVGQIHPIFAESAKNATVTDVEGREFIDFAGGIAVLNTGHVHPKIIAAVTEQLNKLTHTCFQVLAYEPYVELCEKINAKVPG DFAKKTLLVTTGSEAVENAVKIARAATGRAGVIAFTGAYHGRTMMTLGLTGKVVPYSAGMGLMPGGVFRALFPNELHGVSDDDAIASIKRIFKNDAEPRD IAAIIIEPVQGEGGFYVAPKSFMKRLRELCDKHGILLIADEVQTGAGRTGTFFAMEQMGVAADLTTFAKSIAGGFPLAGVCGKAEYMDAIAPGGLGGTYA GSPIACAAALAVMEVFEEEHLLDRCKAVGERLVTGLKAIQAKYPVIGEVRALGAMIAVELFDDGDTHKPNAAAVASVVAKAREKGLILLSCGTYGNVLRV LVPLTSPDEQLDKGLAIIEECFSEL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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