Pseudomonas simiae MEB105, RU03_RS10300
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain MEB105 contig_15, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTGGCCCGTGCCCAGTCGGCCCTGGCCGAGGCTCAGGTGACGGTGGATTCTGCCCAGCTCAACCTCGATCGCTCGGTAATCCGCAGCCCCGTGGACGGTT ACGTCAACGACCGTGCGCCGCGTACCCAGGAGTTTGTCACCGCCGGGCGCCCGGTGTTGTCGGTGGTGGACAGCAACTCTTTCCATATCGATGGTTATTT CGAAGAGACCAAACTCGACGGCATCCACGTCGGCATGGGTGTGGACATCCGTGTGATTGGTGACAACGCCCGTCTGCACGGCCATGTGCAGAGCATCGTC GCCGGTATCGAAGACCGCGACCGCAGCAGCGGCTCCAACCTGTTGCCCAACGTCAACCCGGCATTCAGCTGGGTGCGCCTGGCCCAGCGGATTCCGGTGC GCATCGCTTTTGATGATGTGCCGGCCGACTTCCGCATGATCGCCGGCCGTACAGCCACCGTCTCGATCATCGGCGATAAGGTTAAAGACGGAGACAAACC
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| DNA Sequence for Gene |
>RU03_RS10300
ATGAAGCAGCTGTTGGCCACCGCTGCGTTGGGGTTGTTGCTGTCGGCCTGCCAAGTGGTGGGGCCGGATTACTCGCTGCCAGATAAAGCCGCCATCAACC GTGGCGACCTGCAAGGGCACATTGCGGGCGAGGGCAATAACGTAGTGTCGGCGCCGGTGCCGGCCGATTGGTGGAAGTTGTACAAAGACCCGCGCCTGGA TGAGCTGGTGCGCCAGGCCATGGCCTCGAACACTGACTTGCGCGTGGCCGCCGCGAACTTGCAGCGTGCGCGCTATCAGACCCAGCAAGCTGAATCCGCA GGCGGCTGGAGCCTCGGCGCGAAGGCGGAGGCCCAGCGCCTGCAAGAGTCCGGCGAAGCGTTTTTGCTGGCCGACAAAGTCCCGGTGGGCAACATCGGCA GTGTGGGGATCACCACCTCGTATCAATTCGATCTGTTCGGCACCTTGCAGCGCGGCATCGAGAGCGCCCAGGCCAGCGCCGATGCGGCCCAGGCCGCTGC CGATATCGCCCGCATCACGCTGGTGGCCGATGTCGTGCGCTCCTACACCCAAGTGTGTGCGGCAAACGAAGAACTGGCGATTGCCAACGAGTCCCTCGAC TTGCAAGCCCAGAGCACCCAACTGACCCAACGCCTGCGTGACGCCGGGCGTGGTGATGAAACCCAGGTGACCCGTTCGCAAACCCAATACAAATCCTTGC GCGCCGACATGCCGCGCTACGAAGCGCTGCGCCAAGCTGGTTTGTTCCGCTTGTCGATGCTGCTGGCCAAGCCGGTTGACCAACTGCCGGCGGGCACCGG CACCTGCGCTGAATTACCCCATATCGCCCAACTGTTGCCGGTCGGCGATGGTGCGACACTGCTCAAACGCCGTCCCGATGTGCGCCAGGCCGAACGTCAA CTGGCCGCAGCCACCGCACGTATCGGTGTGGCCACTGGCGCGCTTTACCCGGATATCAGCATCGGCGCCACCGTGGGCACCGTTGGCCTGCTCGACAACC TTGGTCAGCCTGCAACCAACCGTTGGGGCTTTGGCCCGATGATCAGTTGGACTGTACCGACCAACGGCGCCCGCGCGCGCGTCCACGAGGCCGAAGCCGC AACCCAGGGCGCCCTGGCGCACTTTGACGGGGTGGTGCTCAATGCCATCCGCGAAACCCAGACCGGCCTTGCGCAATACACCGCGCAACTGCAACGCCGC GATGCCTTGGCCGAAGCCGGCGAGTCGGCCAAGGAAGCAGCAGGGCAGACTCACCGTTTCTTCCAGGCGGGACGCGCCTCATTCCTGGCCGACCTGCAAG CCACCCGCACGTACACCGATGTGCGCGCGCAACTGGCCGCGGCCAACACCCAGGTTGCCATGAGCCAGATCGATCTGTTCCTGGCCCTGGGCGGTGGTTG GGAAAGCGGACGAACGCAAGCGTCTCAGCCCAGCAAACCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGAATGACTATGCTTTGACAGGTGGAGAGCCGTGACGCTCTGCCTGTCACTGTTCGCGTTTGCTCATGGGGATTCCAATAATGAAAAACCCTTATGCTC CCGCTTTCTGGTGCGTGTGTTTCGCACTGGTATTGTTGTCGGCTACCTACTTCTACGGCGTCATGCTGGCTCACCAACTCGACAAGGCGATGGTGTTTCT CGACAGCGCCTGCCTGGTGATCGGCACCCTATCCATCGGCGTAGTGGCTTGGGCCTCTTACCAGAATCAACGGGTGAAGAAAAAACTCCTCGAACAAGGC AAGACCCGCGTGGCGATCTGGGACACCAAGGTCGCGCTGCGTCGGGTCGAGACCGTGTTCGACCGCTATTTCTGGGGCAGCTATTGGCAGCCGGGGCGGA CCTTCCAGGAGGTCATGGGTGACCTCACTGGCACACCCCTGGAAAAAAGCCTCGAAGTCCTGAAGAAACAGTGCGTGGCCCTCGACCGGCAAGTGGCCGA
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| Amino Acid Sequence |
>RND transporter
MKQLLATAALGLLLSACQVVGPDYSLPDKAAINRGDLQGHIAGEGNNVVSAPVPADWWKLYKDPRLDELVRQAMASNTDLRVAAANLQRARYQTQQAESA GGWSLGAKAEAQRLQESGEAFLLADKVPVGNIGSVGITTSYQFDLFGTLQRGIESAQASADAAQAAADIARITLVADVVRSYTQVCAANEELAIANESLD LQAQSTQLTQRLRDAGRGDETQVTRSQTQYKSLRADMPRYEALRQAGLFRLSMLLAKPVDQLPAGTGTCAELPHIAQLLPVGDGATLLKRRPDVRQAERQ LAAATARIGVATGALYPDISIGATVGTVGLLDNLGQPATNRWGFGPMISWTVPTNGARARVHEAEAATQGALAHFDGVVLNAIRETQTGLAQYTAQLQRR DALAEAGESAKEAAGQTHRFFQAGRASFLADLQATRTYTDVRAQLAAANTQVAMSQIDLFLALGGGWESGRTQASQPSKP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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