Pseudomonas simiae MEB105, RU03_RS09600

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003824	catalytic activity	ISM Inferred from Sequence Model Term mapped from: InterPro:SSF48150	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006284	base-excision repair	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00478	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006281	DNA repair	ISM Inferred from Sequence Model Term mapped from: InterPro:SSF48150	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SMART	SM01009	AlkA_N_2	IPR010316	DNA-3-methyladenine glycosylase AlkA, N-terminal	1	116	2.2E-54
Pfam	PF00730	HhH-GPD superfamily base excision DNA repair protein	IPR003265	HhH-GPD domain	122	256	1.5E-6
Pfam	PF06029	AlkA N-terminal domain	IPR010316	DNA-3-methyladenine glycosylase AlkA, N-terminal	1	116	2.4E-37
Gene3D	G3DSA:3.30.310.20	-	IPR037046	DNA-3-methyladenine glycosylase AlkA, N-terminal domain superfamily	1	116	1.1E-36
Gene3D	G3DSA:1.10.340.30	Hypothetical protein; domain 2	-	-	118	231	1.3E-25
SMART	SM00478	endo3end	IPR003265	HhH-GPD domain	126	284	1.0E-8
SUPERFAMILY	SSF55945	TATA-box binding protein-like	-	-	1	97	3.77E-27
PANTHER	PTHR43003	DNA-3-METHYLADENINE GLYCOSYLASE	-	-	67	283	3.6E-29
Gene3D	G3DSA:1.10.1670.10	-	IPR023170	Helix-hairpin-helix, base-excision DNA repair, C-terminal	234	286	1.8E-9
CDD	cd00056	ENDO3c	IPR003265	HhH-GPD domain	119	280	3.63858E-18
SUPERFAMILY	SSF48150	DNA-glycosylase	IPR011257	DNA glycosylase	106	282	1.74E-37

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.