Pseudomonas simiae MEB105, RU03_RS09245
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain MEB105 contig_14, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGCCAAGCGCAGGTGCCGATCATCATGCTCACCGCCAGCTCCGACGAGGCCGACCGCGTGATCGGCCTGGAGCTGGGCGCCGACGATTACATCGGCAAA CCCTTCAGCCCCCGCGAGTTGCAGGCGCGGATCAAAGCCCTGTTGCGTCGCTGCCAGTTTGGCCAGGAACGCAGCAGTGGTGGCGAGGTGTTGGTGTTTG ATGAATGGCGCCTGGATATGATCAGCCACCGCCTGTTCCATGTGGACGGCGAAGAAGTGATCCTCTCCGGTGCCGACTTTGCCCTGCTCAAATTGTTTCT CGACCACCCGCAGCAGATCCTCGACCGTGACACCATTGGCAACGCCACCCGTGGCCGCGACCTGATGCCGCTGGACCGTATCGTCGACATGGCTGTCAGC CGTCTGCGCCAACGCCTGCGCGATACCGAGAAACCCCCGAGGCTGATCCGCACGGTGCGCGGCAGCGGTTATCAACTGGCAGCCAGCGTGGTTGCCGGCA
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| DNA Sequence for Gene |
>RU03_RS09245
ATGCCCACTGACCATTTGACCGAGCGCCGTCGCCGCTTCCCGGTGCCACGCTCGTTGCTGGGGCGCATGCTGCTGCTGACACTGCTGGCGGTGCTGTTTG CCCAGGCGCTGTCCAGTGTGATCTGGGTCTCGCAATTACGCGCCACTCAGCTCGAAGGCCTGGTCACCAGCGCCCGCAGCCTGGCGCATTCGATGACCGC CAGCGTGAGTTATTTCCGTTCGTTGCCGGTGGCATATCGACCGTTGGTGCTGGACCAATTGCGCAGCATGGGCGGCACCCGTTTCGTCGTGACCCTCAAT GATCGCCCGTTGGACATGGCCATCCTGCCGCAGACACCGCGCAAGCAGGCAGTGCTTGAAGCGGTCAACGAAGTGTTGAAACAAACCCTCGGCGCCGATG TGCATATCTCCGTAGAGTTCGTCAGCGCCGAAGACCTGCGTATCTTCAATGCCGGCCTGAAACTCGACGAACTGCCACGCTCCTGGGCCCATTACGCGTT GACCCTGGAACCGGTTAACCCACCGGTACTGGTTACCCAGATCCAGCTCGCGCCCGGCGAATGGCTGTACATCGCCTCGCTGTTGCCCGAGCCCTACACC AGCCTGGAAGAACAGGGCCTGCCGTCCCAGCAGGTGTGGTTTATCGTGCTGACCAGTGGTTTCCTGCTGCTGTTCATCGGCTTGCTGGTGCACTGGCAGA GCCGGCCCCTCAAGCGCCTGGCGCGGGCGGCGCGGGACATGTCCCTGGGGGCCGACGTAGAGCCGGTGGCCGAAGGCGGCGGCAGTGAAGTGGTGGAAGT GGGCCGTGCGTTCAACGCCATGCGTGAGCGCATCAGCCGTTACCTGACCGAGCGCAGCCAGTTGTTCAGCGCGATTTCCCACGACTTGCGCACCCCGATT ACTCGCCTGCGTCTGCGCGTGGAATTGCTTGAAGACGAGAACCTGCAAACCAAGTTCGGCCGCGACCTGGATGAGTTGGAGTTGCTGGTGAAAGGCGCGC TGCAATGCGTGAAAGACACCGATATCCACGAAAACATCGAACCGGTCGACCTGAACCACGTGCTCGACTGCCTGGTGGAACCGTACCTGGCGCCGAACGG CAATGGCCGCGTTACCCAGCATGGCCGGGCGTTGACGACTTATCCGGGCAAACCGCTGGCGCTCAAGCGCTGCATCGGCAACTTGATCGACAACGCGTTG AAGTATGGCCAGAACGCCCACCTGTACATCGAGGACGACGGCGCGGAGTTCGTTCTGCACGTGGATGACGAAGGCCCCGGCGTGCCGGAGCAGCGGTTGG AGCAGGTGTTTGAACCGCACTTCCGCCTGGCTGGGCAGCAACAGGGCTACGGCCTGGGCCTGGGAATTGCGCGCAACATTGCGCACAGCCATGGCGGCGA AGTGAGTCTGCAGAATCTGCGCGAGGGTGGCTTGCGCGTGACCTTGCAACTCCCTCGCGGATTAGACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATGTATGCGGCCCCAATGTGGGAGCTGGCTTGCCTGCGATAGCGGTGTATCAGCCAACTCATCTGGCACAGACAGACCGCTATCGCAGGCAAGCCAGCTC CCACATGTTGATCTTCATTTGGTCAGATGCTTTGGCGCAGTCGGGCCAAGTCTCTAAGGGGCGGCGCCCCAAACAGCCGGCTGTACTCCCGACTGAACTG CGACGGGCTTTCATACCCCACGCGATACCCCGCTGCCGACGCTTCCAACCCTTCGGCAATCATCAACCGTCGCGCTTCCTGCAAGCGCAACTGCTTCTGA TACTGCAACGGGCTCATGGCGGTGATCGCCTTGAAGCGGTGGTGCAGGGTCGAGACGCTGAGGTTCACTGCCTTGGCCAGGTCATCGATGCGCAGCGGTT GCTCGTAGTTGCCGTTCAACCACGTGATCGCCTGGCTGACCCGATGGCTCTGACTGTTGGCCACGGCGATTTCATACAGCCGATAACCCTGCGGCCCCCG
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| Amino Acid Sequence |
>sensor histidine kinase
MPTDHLTERRRRFPVPRSLLGRMLLLTLLAVLFAQALSSVIWVSQLRATQLEGLVTSARSLAHSMTASVSYFRSLPVAYRPLVLDQLRSMGGTRFVVTLN DRPLDMAILPQTPRKQAVLEAVNEVLKQTLGADVHISVEFVSAEDLRIFNAGLKLDELPRSWAHYALTLEPVNPPVLVTQIQLAPGEWLYIASLLPEPYT SLEEQGLPSQQVWFIVLTSGFLLLFIGLLVHWQSRPLKRLARAARDMSLGADVEPVAEGGGSEVVEVGRAFNAMRERISRYLTERSQLFSAISHDLRTPI TRLRLRVELLEDENLQTKFGRDLDELELLVKGALQCVKDTDIHENIEPVDLNHVLDCLVEPYLAPNGNGRVTQHGRALTTYPGKPLALKRCIGNLIDNAL KYGQNAHLYIEDDGAEFVLHVDDEGPGVPEQRLEQVFEPHFRLAGQQQGYGLGLGIARNIAHSHGGEVSLQNLREGGLRVTLQLPRGLD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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