Pseudomonas simiae MEB105, RU03_RS08275
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain MEB105 contig_13, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATTGGTGGGGGTCAACGGGTGGTCGGGGGAGGGCGTTGCCATCGGTTGAAGAGGGTCAGTGGGGGCCCGGCCCCCACTGACCTATTCGATCAGCCTTCCT TACGCACGGTGGCCACATCGGCAGCCTTGACCCGTACACGCTTGCCGGCTATGTCGGTGAACTCGTAGAAGCCATCGGCGGTCTGGGTTTTCGGGGTGTC CTTGGTCAAATACTGCGTGCCATTTTGCAGCGTCACTACGGTTTGCGTCGCGCAACCGGCCAATACCAGAAAAGTGAGTGCAACCAGCGGCAGACCCAAA TTCTTCATGTTCATAACCCTTACCTTAACCCTTAAAAGTCCCGCGCCAGAGGCCGCGGGCAACAAATGTTACGCCATCGACTTCACCATCTGATCACTTT TATGCAAAAAGTTGCAGCCGCCATTTATCTATTAGCGATTGCAACCTGGTCTTTGCGACGGCACTCTGTATGCATAACCAGTATTTGATCGCTGCGTACC
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| DNA Sequence for Gene |
>RU03_RS08275
ATGGCCAATCCCCTCGAAGACCCGCTCTATTACCTGCATAACTTCCGCCAGGTCCTGCATTGGCTGGGGCTACGTTATGCGGATCTGCTCGATGCGGACG AACAGCATTTCATTCAGCAATTTGACAGGTTGCCGCAGCCATCCCAGGCGCTTTTGGTGCGCATGGTGATGCGCAAGGGCGTGCATTTCCGGGCGGGCAA ACTCAACTACGTGGAGATCGGCTGCACCCACACCGCTGCTGCGCCGTTGCTTGAATTGGGCTGGGTCGACACTCAGTTCTTACTGGCCTTTGAAGAGCTG TTTGCCTTGCTGCAAAAGGGCGAAATCCTCGGCGCGTTCAAGCCCTGGATCGACCAGCCCAAAGGCAGGAAGTCCGATTGGCTGCAAGGGCTGTCGGCAC ACTTTACCGACCGCCGCAGTTTTGCTGGCTGGTGTCCGGAGCTTGCCGACACGCTGTACAGCCTCTCGATCATGGAGCTGTGCGACCGCCTGCGCCTGAT GTTCTTCGGCAACCTGCATCAGGACTGGTCGGAATTCGTGCTGGCAGACCTGGGCATCTACACCTACGAAAAAGTCGAATTCTGCGCAGAATCCCGCGGC CTGCGCAGCCGTGACGATGTGCATGGTTTTCTGTTCCTGCACCAATGCCAGCAGGCTTTTGAGGCCGGTGAAACGCTGGAGCAGGTACTGGCGCAGATCG CAACCTTGAGTACCGACAATCCTTGGCTGGAAAAGCGGCGGGCCAAATTGTTGTTCCAGATCGGTCAACAGTGCGAGCGCATTGCTGAACTGGCATTGGC GGAACAGATCTATCGCACGTGCGCCTATCCCGGTGCCCGCTCCAGGTTGATACGGGTGCTGGAGCGCCAGGAGGACTACGGCCAAGCCATGGCCTTGGCG AACGCCGCTCAACAGGCTCCGGAAAGCGCCGCCGAGCAGCAGCACTTATTGCGTGTGGTGCCACGGCTGCGCCGCAAACTGGGTAAGCCGGCCTTGCCCA AAGCGCAGCCTCGTGCGGTCACGCGCCTGGACCTGGCCCTTGCGCTACCCGAGCCGCTGATGTCGGTGGAGTACTGCGTGCAGGCGCACCTCAGCGAGCC TGATGGGCCGGTGCACTACGTTGAAAACGGGCTGATCAATTCACTGTTCGGCCTGCTGTGCTGGGACGTAATCTTTGCGCCGCTGCCGGGCTCATTCTTC CATCCGTTTCAACGTGGCCCGGCGGACCTGCACAGCGAGGACTTCCGCCCGCGCCGTGCACCGCTGTTCGCTGCGTGTTTCGAGCAGTTGCAGGACGAAC GCTACAAAACCACGATTCGCCAGCGTTACAGCGACAAATGGGGGATCCAGTCGCCCTTCGTGTTCTGGAACCTGCTGAGCGAAGACCTGCTGGAACAGGC CCTAGCCTGCCTGCCCGCCGAACACCTGCGCTACTGGTTCGAACGGCTGTTACTGGACATTCGCGCCAACCGCGCCGGCATGCCGGACCTGATCCAGTTC TGGCCGACGCAAAAAACCTACCGCATGATCGAGGTCAAGGGACCTGGCGATCGCCTGCAGGATAACCAGTTGCGCTGGCTGGAGTTCTGCAGCGAATACC AGATGCCGGTAACGGTCTGCTATGTGCGCTGGGCAGAGTCGGCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTACAGCGTTGCCGTGCGCGCACTGTGCGAGTTCACGGCCAAGGTCGGTGACCTCGACCTGCGCTTCACACCGTCGCCCAGTGCTCAGGAAGGCATCAT CGGCCACCGCACCGTCGCTTCGCGGCGCAGCGCGCACTACCAGAATGAAGTGGCGCTAGAAGGCGAGTACCAACAACTCAAGGTGCGGGGCAGGGCGGAC GGCTACGACCCGGACGCCAACCGTCTGGAAGAAGTGAAGACCTATCGCGGTGACCTCGATGCCCAGCCCGCCAACCATCGTCAATTACACTGGGCTCAGG TCAAAGTGTATGGCTGGTTGATGTGCCAGAAACTCAACCTCTCGCACATCAACCTGGCGCTGGTGTACTTCGACATCGTCGGTGAAGGCGAGACGGTGCT CAACCAACGCTTTCAAGCCGCCGAGCTGGAACCCTTCTTCAACCAGCAATGCGCGCTGTTCCTCGGTTGGGCCCAGCAGGAAATGGCACACCGCGAAGCG
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| Amino Acid Sequence |
>nuclease
MANPLEDPLYYLHNFRQVLHWLGLRYADLLDADEQHFIQQFDRLPQPSQALLVRMVMRKGVHFRAGKLNYVEIGCTHTAAAPLLELGWVDTQFLLAFEEL FALLQKGEILGAFKPWIDQPKGRKSDWLQGLSAHFTDRRSFAGWCPELADTLYSLSIMELCDRLRLMFFGNLHQDWSEFVLADLGIYTYEKVEFCAESRG LRSRDDVHGFLFLHQCQQAFEAGETLEQVLAQIATLSTDNPWLEKRRAKLLFQIGQQCERIAELALAEQIYRTCAYPGARSRLIRVLERQEDYGQAMALA NAAQQAPESAAEQQHLLRVVPRLRRKLGKPALPKAQPRAVTRLDLALALPEPLMSVEYCVQAHLSEPDGPVHYVENGLINSLFGLLCWDVIFAPLPGSFF HPFQRGPADLHSEDFRPRRAPLFAACFEQLQDERYKTTIRQRYSDKWGIQSPFVFWNLLSEDLLEQALACLPAEHLRYWFERLLLDIRANRAGMPDLIQF WPTQKTYRMIEVKGPGDRLQDNQLRWLEFCSEYQMPVTVCYVRWAESA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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