Pseudomonas simiae MEB105, RU03_RS07445 (gyrB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain MEB105 contig_11, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGTCTTTGAGCAGACCTTGAGTGAGTTGCTGGAACTCGAAGGGCTGACGCTGAGTTACTACCGTGGCTGGGACAAAGAACGTGAGCTGAGTGCAGTGCTC GCGACGTCCTTGCAGCGGGATCAGCAAATTGGCCATACCCAGGCCGGACCCCAACGGGCTGATTTGCGTCTTAGACTAGGCGCTCACAATGCCGCGGATA TTTTGTCCCGTGGTCAGCAGAAGTTGGTGGTGTGTGCATTGCGCATCGCCCAGGGCCATCTGGTTAGCCAGGCCCGGCGCGGTCAGTGTATTTATCTGGT GGATGACTTGCCGTCGGAGCTCGATGAGCAACACCGCCGCGCGTTATGTCGCTTGTTGGAAGAATTACGCTGCCAGGTGTTTATCACCTGTGTAGACCAC GAATTATTGAGGGAAGGCTGGCAGACGGAAACGCCAGTCGCTTTGTTCCACGTGGAACAAGGCCGTATCACCCAGACCCACGACCATCGGGAGTGAAGGC
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| DNA Sequence for Gene |
>RU03_RS07445
|gyrB
ATGAGCGAAGAAAACACGTACGACTCGACCAGCATTAAAGTGCTGAAAGGTTTGGATGCCGTACGCAAACGTCCCGGTATGTACATTGGCGACACTGATG ACGGTAGCGGTCTGCACCACATGGTGTTCGAGGTGGTCGACAACTCCATCGACGAAGCTCTGGCCGGTCACTGCGACGACATCAGCATCATCATCCACCC GGATGAGTCTATTACCGTGCGCGACAATGGTCGCGGCATTCCGGTAGACGTACACAAAGAAGAAGGCGTTTCGGCAGCAGAGGTCATCATGACCGTGCTC CACGCCGGCGGTAAGTTCGACGACAACTCCTATAAAGTTTCCGGCGGTCTGCACGGTGTGGGCGTTTCGGTAGTGAACGCTCTTTCTGAAGAGTTGATCC TGACTGTTCGCCGCAGTGGCAAGATCTGGGAACAGACCTACGTTCACGGTGTTCCAAAAGAACCGATGAAAATCGTCGGTGACAGTGAAACCACCGGTAC GCAGATCCACTTCAAGCCATCGGCTGAGACCTTCAAGAATATCCACTTTAGCTGGGACATCCTGGCCAAGCGTATTCGTGAACTGTCCTTCCTGAACTCC GGTGTGGGTATTGTCCTCAAGGATGAGCGCAGCGGTAAGGAAGAGCTGTTCAAGTATGAAGGTGGCCTGCGCGCATTCGTTGAATACCTGAACACCAACA AGACCGCGGTCAACCAGGTGTTCCACTTCAACATTCAGCGTGAAGACGGCATCGGCGTGGAAATCGCTCTGCAGTGGAACGACAGCTTCAACGAGAACCT GTTGTGCTTCACCAACAACATTCCTCAGCGCGACGGTGGTACTCACCTGGTGGGATTCCGTTCCGCACTGACGCGTAACCTGAACACCTACATTGAAGCC GAAGGCCTGGCCAAAAAGCACAAAGTCGCCACCACCGGTGACGATGCCCGTGAAGGCCTGACCGCGATTATCTCGGTAAAAGTACCTGATCCGAAGTTCA GCTCTCAGACCAAAGACAAGCTGGTGTCTTCCGAAGTGAAGACTGCGGTGGAACAGGAGATGGGCAAGTACTTCTCCGACTTCCTGCTGGAGAACCCGAA CGAAGCCAAGCTGGTTGTCGGCAAGATGATCGACGCCGCGCGTGCTCGTGAAGCGGCGCGTAAAGCCCGTGAGATGACTCGTCGCAAAGGCGCGCTGGAT ATCGCAGGCTTGCCAGGCAAACTGGCTGACTGCCAAGAGAAGGACCCTGCCCTCTCCGAACTGTACCTGGTGGAAGGTGACTCTGCTGGCGGTTCCGCCA AGCAGGGTCGTAACCGTCGCACCCAAGCCATCCTGCCGTTGAAAGGCAAGATCCTCAACGTCGAGAAGGCTCGCTTCGACAAGATGATTTCCTCCCAGGA AGTCGGCACCTTGATCACGGCGTTGGGCTGCGGTATCGGCCGCGACGAGTACAACATCGACAAGTTGCGCTATCACAACATCATCATCATGACCGATGCT GACGTCGACGGTTCGCACATTCGTACGCTGCTGCTGACGTTCTTCTTCCGTCAGTTGCCGGAGTTGATCGAGCGTGGCTACATCTACATCGCTCAGCCGC CGTTGTACAAAGTGAAAAAAGGCAAGCAAGAGCAATACATCAAAGACGACGACGCCATGGAAGAGTACATGACGCAGTCGGCTCTGGAAGATGCCAGCCT GCACTTGAACGACGAAGCGCCGGGCATTTCCGGTGAGTCGCTGGAACGTCTGGTAAACGACTTCCGCATGGTGATGAAGACCCTCAAGCGCCTGTCGCGT CTGTACCCTCAGGAATTGACCGAGCACTTCATCTACCTGCCGGCTGTCAGCCTTGAGCAATTGGGCGATCACGCAGCGATGCAAGATTGGCTGGCTCAGT ACGAGGTGCGCCTGCGTACCGTCGAGAAGTCTGGTCTGGTGTACAAGGCCAGCCTGCGAGAAGACCGTGAACGTAACGTGTGGCTGCCTGAGGTCGAACT GATCTCCCACGGTCTGTCGAACTACGTCACGTTCAACCGTGACTTCTTCGGCAGCAATGACTATAAGACCGTGGTAACGCTGGGCGCTCAACTGAGCACC CTGTTGGACGACGGCGCTTATATTCAGCGTGGCGAACGCAAGAAGCAGGTCAAGGAATTCAAGGAAGCCCTCGACTGGCTGATGGCGGAAAGCACCAAAC GTCACACCATCCAGCGATACAAAGGTCTGGGTGAAATGAACCCGGATCAGCTGTGGGAAACCACCATGGACCCTGCTCAGCGTCGCATGTTGCGTGTGAC CATCGAAGACGCCATTGGCGCAGACCAGATCTTCAACACCCTCATGGGTGATGCGGTCGAGCCTCGTCGTGACTTCATCGAGAGCAATGCCCTGGCGGTT TCCAACCTGGACTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCCGGTAAGCCCGTCAAACTAAAATGGCCAACGCTTAAACGTTGGCCTTTTTTATTGGGTAAAACACGTTGATTTTTAAAATGCTCCACGTGGAACATC AGCACACTAACTTTGAGAAGCGGCCGCCACACTCTCCAATCGATAACCATACCCATAGATGGTCAGTAACTGCCAACCTCGGTCCGCCGTCAGCCCAAGT TTGTTTCTTAACCGGTAGATATGTGTATCCAGCGGCCGTGAAGACACCATTTCTTCATGGGTCCAGAATCGCTCGTAGAGGTACTCGCGAGACAGCGGTC GCGCCAGGTTGGCAAACAGACAGCTAGCCAAGCGATACTCCCGTTCTGTGAGGTTGATGGGTTTTCCCGCTCGGGTCACCGTCAATTCGGCATCGTCAAA GGTCAAGTCGTTGAAGCTTTGCACTTCATGGCTAGCAGACTTCTGCAGGCCATGCCGACGCAGCACCGCCGTAACCCGTGCTTTCAGTTCATTGGGGCGA
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| Amino Acid Sequence |
>DNA gyrase subunit B
MSEENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVL HAGGKFDDNSYKVSGGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPKEPMKIVGDSETTGTQIHFKPSAETFKNIHFSWDILAKRIRELSFLNS GVGIVLKDERSGKEELFKYEGGLRAFVEYLNTNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYIEA EGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALD IAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRDEYNIDKLRYHNIIIMTDA DVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGKQEQYIKDDDAMEEYMTQSALEDASLHLNDEAPGISGESLERLVNDFRMVMKTLKRLSR LYPQELTEHFIYLPAVSLEQLGDHAAMQDWLAQYEVRLRTVEKSGLVYKASLREDRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVVTLGAQLST LLDDGAYIQRGERKKQVKEFKEALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDAIGADQIFNTLMGDAVEPRRDFIESNALAV SNLDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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