Strain | Pseudomonas simiae strain MEB105 contig_1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
ATACCGTGATCGGCAACGGCGTGAAGCTCGACAACCAGATCCAGATCGCCCACAACGTGCAGATTGGCGATCACACCGCCATGGCGGCCTGCGTGGGTAT CTCCGGCAGTACCAAGATCGGCAAGCATTGCATGCTCGCCGGTGGCGTCGGGTTGGTCGGGCATATCGATATTTGCGACAACGTCTTCATCACCGGCATG ACCATGGTCACTCACTCGATTACCGAGCCTGGGGCCTACTCTTCCGGTACCGCCATGCAGCCCGCGGCTGAATGGCGCAAGAGTGCAGCTCGGTTGAGGC AGCTTGACGACATGGCTCGACGTCTCAAACAGCTGGAAAAGCGTGTTGGGGACGTGACCCCTGGCGGTAATGCTTCATCAGAAGGCTGATACCATTTCCA TATCAAGTGTGCACAGCCGCTAGACTGCCTCCTTGATTTGCTAGCGGGGCGTGCTTTTAGTTCGCCCGCCCCCAATCTTTATTACAGGCTTCCCCCCGAA
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DNA Sequence for Gene |
>RU03_RS00045
ATGATGGACATCAACGAGATTCGCGAATACCTGCCTCACCGTTACCCGTTCCTGCTGGTGGATCGCGTAGTGGACCTCAACGTCGAGGAAAAGCGCATTC GTGCCTACAAGAATGTCAGCATCAACGAACCGTTCTTCAACGGTCACTTTCCCGCGCATCCCATCATGCCGGGTGTGTTGATCATCGAAGCGATGGCCCA GGCTGCCGGTATCCTTGGTTTCAAAATGCTCGACCTCAAGCCTGCCGACGGCACGCTTTACTATTTCGTGGGCTCCGACAAGTTGCGTTTCCGCAATCCG GTGACCCCTGGCGACCAGTTGATCCTGGAAGCCAAGTTCATCAGCTGCAAGCGCCAGATCTGGAAGTTCGAATGCCAGGCCTCGGTGGACGGCAAGCCGG TGTGCTCCGCTGAGATCATCTGTGCGGAACGCAAACTATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GTTTGATTGACCCTCGCGCAATCATCGATCCGTCGGCCGTTCTGGCCGCCGACGTTGAGGTCGGCCCCTGGTCGATCATCGGCGCAGGTGTGGAAATCGG CGAGGGGACTGTCATCGGGCCGCACGTGATCCTCAAAGGTCCGACCCGCATTGGCAAACACAATCGCATCTACCAGTTCTCCTCGGTAGGCGAAGACACC CCGGACATGAAGTACAAGGGCGAAGAGACTCGCCTGGTCATCGGTGATCACAACATCATCCGTGAAGGCGTGACCATTCACCGTGGCACCGTTCAGGATC GGGCCGAAACCACCCTGGGTGATCACAACCTGGTCATGGCTTACGCGCACATCGGTCACGACAGCGTCATCGGCAACCACTGCATCCTGGTCAACAACAC CGCGTTGGCCGGGCATGTGCACGTTGACGATTGGGCGATCCTGTCCGGGTTCACCCTGGTGCATCAGTACTGCCATATCGGCGCCCATAGCTTTTCCGGC
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Amino Acid Sequence |
>3-hydroxyacyl-ACP dehydratase
MMDINEIREYLPHRYPFLLVDRVVDLNVEEKRIRAYKNVSINEPFFNGHFPAHPIMPGVLIIEAMAQAAGILGFKMLDLKPADGTLYYFVGSDKLRFRNP VTPGDQLILEAKFISCKRQIWKFECQASVDGKPVCSAEIICAERKL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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