Pseudomonas simiae 2-36, LS88_RS25915
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain 2-36 scaffold14.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCTTTGGGTGGTTTCCTGAAAAAAGGATTGCCTCATGGCTCTCGACGTTCAAGAAAAAGCACAAATCGTTGCTGACTATCAGCAAGCTGTTGGTGACAC TGGTTCGCCAGAAGTGCAAGTTGCACTGCTGACCCACAACATCAACAAGCTGCAAGGTCACTTCAAGGCCAACGGTAAAGATCACCACTCCCGTCGTGGT CTGATCCGCATGGTAAACCAGCGCCGTAAGCTGCTGGACTACCTGAAAGGCAAGGATCTGGGTCGTTATCAGACTCTGATCGGTCGCCTGGGTCTGCGTC GCTAATAAGCGATTGCGCTAGAGGTTGGTTGTCTGCCGTGTGTCAGTGGGATTCCCGCTGGCCCATGGTAGGCTCCCAGCCTCAAGTTTTATCTGGATAC ACGTTTTACCCTGGACCAGGTTCGGGCCGATCCCCGACATTGCCCAAGAATTTCGCAAGAAGACAAGTTCCCCCAAGAGCCACAAAGAAGGTAGGACACC
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| DNA Sequence for Gene |
>LS88_RS25915
GTGAACCCGGTTATCAAAAAATTCCAGTTCGGTCAGTCGACCGTTACCCTCGAGACAGGCCGTATCGCCCGTCAAGCCTCCGGCGCAGTGCTGGTTACCG TTGACGACGACGTTACCGTTCTGGTGACCGTTGTTGGCGCCAAGACCGCTGACCCGAGCAAAGGCTTCTTCCCTCTTTCCGTTCACTACCAGGAAAAGAC TTACGCTGCCGGTAAGATCCCTGGCGGTTTCTTCAAGCGCGAAGGCCGTCCTTCCGAGAAAGAAACCCTGACTTCCCGACTGATCGACCGTCCGATCCGT CCGCTGTTCCCAGAAGGCTTCATGAACGAAGTGCAGGTTGTCTGCACCGTCGTTTCCACCAGCAAAAAGACCGATCCGGACATCGCTGCGATGATCGGTA CTTCGGCTGCCCTGGCGATCTCCGGCATTCCTTTCGATGGCCCGATCGGCGCAGCCCGCGTTGCGTTTCACGAAAGCACCGGCTACCTGCTGAACCCGAC TTACGAGCAACAGAAAGCCTCGAGCCTGGACATGGTCGTCGCCGGTACCTCGGAAGCCGTGTTGATGGTTGAATCGGAAGCCAAAGAGCTGACCGAAGAC CAGATGCTGGGTGCCGTACTGTTCGCGCACGACGAGTTCCAGGCCGTTATCAAGGCCGTCACCGAGCTGGCCGCAGAAGCTGCCAAGCCAACCTGGACCT GGGCTCCACAAGCTGAAGCCACCGAGCTGCTGGGCGCCATCCGCTCCGAGTTCGGCGCTGCCATCTCCGACGCCTACACCATCACTGTCAAGGCCGACCG TTACGCTCGTCTGGGCGAGCTGAAGGATCAGGTTGTCGCCAAGCTGTCCGGTGAAGAAGGCCAGCCTTCCGCCAGCGACGTTAAAGCGGCTTTCGGTGAA ATTGAATACCGCACCGTTCGCGAAAACATCGTTAACGGCAAGCCACGTATCGACGGTCGTGACACCCGCACCGTACGTCCGCTGAACATCGAAGTTGGCG TTCTGCCAAAGACTCACGGTTCGGCGCTGTTCACCCGTGGTGAGACTCAGGCTCTGGTCGTCGCGACCCTGGGCACCGCCCGTGACGCCCAATTGCTGGA CACCCTGGAAGGCGAGAAAAAAGACCCGTTCATGCTGCACTACAACTTCCCACCGTTCTCGGTAGGTGAGTGTGGTCGCATGGGTGGCGCTGGTCGTCGC GAAATCGGTCACGGCCGTCTGGCCCGTCGTTCGATCGCAGCCATGCTGCCTGCCGCTGACGTGTTCCCGTACACCATCCGTGTGGTCTCGGAAATCACCG AATCCAACGGTTCCAGCTCCATGGCGTCCGTTTGCGGTGCTTCCCTGGCGCTGATGGATGCTGGTGTGCCGATGAAGGCACCGGTTGCCGGTATCGCCAT GGGCCTGGTTAAAGAAGGCGAGAAGTTCGCCATCCTGACCGACATCCTGGGTGACGAAGACCACCTGGGCGACATGGACTTCAAAGTAGCCGGTACCGCC AAAGGTGTGACCGCGCTGCAGATGGACATCAAGATCAAGGGCATCACCGAAGAGATCATGGAAATCGCCCTGGGCCAAGCCCTGGAAGCGCGCCTGAACA TCCTCGGCCAGATGAACCAGATCATTGGTCAGTCGCGTACCGAGCTGTCGGAAAATGCTCCGACCATGATCGCGATGAAAATCGACACCGACAAAATCCG TGATGTCATCGGTAAAGGCGGCGCGACTATCCGTGCGATCTGCGAAGAGACCAAGGCTTCGATCGACATCGAAGACGATGGCTCGATCAAGATCTTCGGC GAAACCAAGGAAGCGGCTGAAGCAGCACGTCAGCGCGTACTGGGCATCACCGCAGAAGCCGAGATCGGCAAGATCTACGTGGGTAAGGTTGAACGCATCG TCGACTTCGGTGCATTCGTCAACATCCTGCCGGGCAAGGACGGTCTGGTTCACATCTCCATGCTGAGCGACGCTCGCGTTGAGAAAGTGACCGACATCCT GAAAGAAGGCCAGGAAGTGGAAGTGCTGGTGCTGGACGTGGATAACCGCGGCCGTATCAAGCTGTCCATCAAGGACGTAGCAGCAGCCAAGGCTTCGGGC GTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGCCCCAAGCGTTCAGCTGAAAAAGAGGACTCTTCGGAGTCCTTTTTTTATGCCTGGGGGAAAATGTCGGGAAATCAGCCGCTTAGCAAAATCCAAAAG CCGCAACTTGCATGCAGAGGCGGGGGCTTTCATGCAAGATGCACGATTCCGAAAATTAGCTGTTTTCTTAACTCATTGTTTTATAAGGATTTAATCGCCG TTCACGACTTGGCACACTGCCTGCAATATCCCTGTTAACGCTGCAGCATCAAGGTTTACGCACTGCAGATTTTTAATAAAACAGGAGTTACTCGTATGAA GAAGTTCGCTCTCGCTACTGCTACCGCTCTGACCCTGGCCATGGGTGCTAACGTTGCCTTTGCTCAGACTTCCCAAGCGCCAATGACCCTTGCAGCTGGT GAAGCTACCAAGGCCAAGGAAGCTACTTCTGACACTTGGATCACCACCAAAGTTAAAGCCGACCTGTTGACCGAAAAAGGCATTCCAGGTTCTGACATTA
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| Amino Acid Sequence |
>polynucleotide phosphorylase/polyadenylase
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVTVLVTVVGAKTADPSKGFFPLSVHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIR PLFPEGFMNEVQVVCTVVSTSKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQKASSLDMVVAGTSEAVLMVESEAKELTED QMLGAVLFAHDEFQAVIKAVTELAAEAAKPTWTWAPQAEATELLGAIRSEFGAAISDAYTITVKADRYARLGELKDQVVAKLSGEEGQPSASDVKAAFGE IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRR EIGHGRLARRSIAAMLPAADVFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILTDILGDEDHLGDMDFKVAGTA KGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASG V
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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