Pseudomonas simiae 2-36, LS88_RS24960 (ligD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas simiae strain 2-36 scaffold12.1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TCGCGCCGGATAAGCGTGGCGGCAAGGTCTACGCATTGCTAAGGGAAACCCTCAGGAAAACCCGCAAAGTGGCCCTGGCCAATGTCGTGCTGCACACCAA GCAGCACCTGGCGGCCTTGATGCCGTTGGACTCGGCACTTGTGCTGGTAATGCTGCGCTGGCCTGCCGAAGTGCGCAGCCTGGACGAACTGGAGCTGGGC AGCGACGTGACCAAGCCGAGCCTGGCCAAGGGCGAGCTGGACATGGCCAAGCGCCTGGTGGACGACATGAGCGCCGACTGGCAGCCCGACGACTACCGCG ACAGTTTCCAGGAAAAAATCATGGCGCTGGTGGCCAAAAAGGCCAAGGCCGGCAAGATCGAGGATGTGGAAACCAGCAAAGACAGCGAAGAACGCAAGTC CGCCGATGTGATCGACCTGACGGAACTGCTCAAGCGTAGCCTGGCCGGCAAACCCACGAAGAAGCCTGCCGCGAAGAAATCCACCAAGGCCTCCTAAGTC
DNA Sequence for Gene
>LS88_RS24960 |ligD
ATGTCCAAGCCCTTGAGCGAATACAACCGCAAACGTGATTTCGGGATAACCGCCGAACCGGCAGGCAGTGCGCCAGCAGGCAAACGCAAAGCCTCGGCGC TGTCGTTTGTGATTCAAAAGCATGACGCACGCAACCTGCACTATGACTTCCGCCTGGAGCTCGACGGCGTACTGCTCAGTTGGGCCGTCCCCAAAGGCCC GAGCCTGGATCCCAGCCACAAGCGCCTGGCCGTCCACGTCGAAGATCATCCCCTGAGCTATGGCGGCTTTGAAGGCAGCATTCCAGCGGGTCAGTACGGT GCAGGCGATGTCATCGTGTGGGACCGCGGCATCTGGCAGCCCCACGATGAGCCCCGCAAGGCCTACGCAGCCGGCAAGCTCAAATTCACCCTGGTCGGCG AGAAGCTCTCCGGTGACTGGGCGCTGGTGCGCACGCGCTTGAAGGGCAGCGGCGACAAGGAACAATGGCTGCTGATCAAGGAAAAGGACCCACAGGCGCG CTCGGCCGACGACTACGATATCGTCCAGGCCCAGCCCAACAGCGTGCTCAGCGATGCCTCAGTGGGCAAACCCAAGACGCGGGCCAAGGCCAGGAAAACC GCCCTCCCCGAGCAATTCACCCCACAATTGGCCACACTGGTGGACCGTGCACCCGAGGGCGATTGGCAATACGAAATCAAGTTCGACGGCTACCGCATGC TCGCACGTATCCAAGCGGGTGAAGTGCGCCTGTTCACCCGCAACGGGCACGACTGGACCGAGCGTCTGCCGCGTCAGGTCAAGGCCTTGCAGGCACTGAA GCTCAAGGACAGCTGGCTGGATGGTGAGGTGGTCAGCCTCAATGGCGACGGCCTGCCGGACTTTCAGGCGCTGCAAAATGCCTTCGATATCGGCCGCAGC CTGGACATTGTCTACTACTTGTTTGACGCGCCCTTTCTCAATGGCGAGGACCAACGCCAGGCGCCGGTCGAGGAACGCCGCGCCGCCCTAAAGGAGGCTC TGACCGGTAGCCGCAGCACATTGCTGCGCTATTCCGAAGCGTTTACCGCGCACCACCGGGACATCTTTGAAAGCGCCTGCGACTTGGCCCTCGAAGGCGT GATCGGTAAGCGCCTGGGCAGCCCGTACGTTTCCCGTCGCAGTGCCGACTGGATCAAACTCAAATGCCGGCTGTCCCAGGAATTCGTGATCGTCGGTTAC ACCCGGCCACAGGGTTCACGCAGTGGCTTCGGCGCGCTGTTGCTGGCGGTGAATAACTACACGGGCCTGGTGTACGCGGGCCGTGTGGGAACGGGTTTCG ATCAGGCGGCGCTGAAAGCCATTTACGCGCAGCTCACACCGCTGGAGTGCGAGACGTCACCCCTGGCGAAGCCACTGTCCAGCGCCCAAGCACGTGGTGT GCATTGGGTCAAACCGACGTTGGTCGCGCAGGTGCAGTTTGCCGAGTGGACACGCGAAGGCGTGGTCCGCCAGGCAGCGTTTGTCGGGCTGCGCACCGAC AAGCCGGTGGCGCAGGTTGTTCATGAGCAACCACGCACGGTCCACTCAAAGAAGCCGGTGAAAAAAACCAGTCGCGATGTGAACATCACCCACCCAGACC GTGTGATCGATAAACACAGCGGCACACAAAAACAGCAACTCGCGCAATTCTACGACACCATCAGCCAATGGATTCTGCCCTTCCTGCGCCATCGTCCTGT CTCACTGCTGAGAGCGCCCGAGGGTATCGAAGGCGAGCAATTCTTCCAGAAACACTCGGAGCGTCTGGCCATTCCCAACATCAAGCAATTGGATCAGTCT CTCGATCCTGGCCATGCACGCCTGATGGAAATCGACAACGTCGGCGCATTGATCGGCGCAGTACAAATGGGCAGCGTGGAGTTTCACACCTGGGGCGCCA CCTCGGACAAGATCGAAACCCCGGACCTGTTTGTGCTCGATCTCGACCCGGACCCGGCACTGCCCTGGAAAGCCATGCTGGAGGCCGCGCAACTCACCCT GTCGGTTTTGGATGAGCTGGGGTTGCAAGCCTTCGTCAAAACCAGCGGCGGCAAGGGCCTGCACCTGATCGTGCCGTTGGCGCGCCGAGACAATTGGGAG ACCGTCAAGGCGTTCGCCAAGGGCATCGCCCAGTTCATGACCGAGCAGTTGCCCGAACGTTTTACCGCGACATCGGGCCCCAAAAACCGGGTCGGCAAGA TCTTTATCGATTACCTGCGCAATGCCCGCGGTGCCAGTACCGTAGCGGCGTATTCCGTGCGCGCACGGCCTGGCTTGCCAGTGTCGGTACCGGTCAGCCG CGAGGAGTTGGAGGGGTTACGCGGTGCGCAACAATGGACCGTCGCCAATGTGCTGCAGCGCTTGAACGCTTTGAAAGCGGACCCCTGGGCGGGGTATGCC AATCGCCAGAAGATCAGCAAGAAGATGTGGGACAAACTGGGCGCCCATCCACCGGAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ATGGCGCCCACAAAGCGATCCTCAGATCAGCAGGAAAATAGCTGCCAATCCAGCGAAGATCGCCCATTTTTCCAGGTAGTAGCGCGTACGATTGCGCTTT TTCAGTTCCTTGCCACGCAGGCGGATCTTGTACAGACGCGTGAAGGCGCGATTGAGCCCGCCGGTCTTGTCACCCGCATCGTTGGGCGAACCTGCAGCCG CCATCACGTTACGGCTGAACCAGCGGTTGAACGCAGCCGCCCAGCGGTATTTCATCGGCCGCTCGATGTCGCAGAACAGGATGATGCGGTTCTGCTGCGT GGTGTTTTCGGCGTAGTGGATGTAGGTCTCGTCGAACATCACCGGCTCGCCATCACGCCAGTAATAGTTCTCGCCATCCACATTGATGTAGCAGCCAGGA TCGTTCGGGGTGTCCAGGCCCAAGTGGTAGCGGTACGAGCCGGCATAGGGGTCACGGTGGCGCACCAGCTTGGAGCCCGGCGGCAGCTCGGCGAACATCG
Amino Acid Sequence
>ATP-dependent DNA ligase
MSKPLSEYNRKRDFGITAEPAGSAPAGKRKASALSFVIQKHDARNLHYDFRLELDGVLLSWAVPKGPSLDPSHKRLAVHVEDHPLSYGGFEGSIPAGQYG AGDVIVWDRGIWQPHDEPRKAYAAGKLKFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKEKDPQARSADDYDIVQAQPNSVLSDASVGKPKTRAKARKT ALPEQFTPQLATLVDRAPEGDWQYEIKFDGYRMLARIQAGEVRLFTRNGHDWTERLPRQVKALQALKLKDSWLDGEVVSLNGDGLPDFQALQNAFDIGRS LDIVYYLFDAPFLNGEDQRQAPVEERRAALKEALTGSRSTLLRYSEAFTAHHRDIFESACDLALEGVIGKRLGSPYVSRRSADWIKLKCRLSQEFVIVGY TRPQGSRSGFGALLLAVNNYTGLVYAGRVGTGFDQAALKAIYAQLTPLECETSPLAKPLSSAQARGVHWVKPTLVAQVQFAEWTREGVVRQAAFVGLRTD KPVAQVVHEQPRTVHSKKPVKKTSRDVNITHPDRVIDKHSGTQKQQLAQFYDTISQWILPFLRHRPVSLLRAPEGIEGEQFFQKHSERLAIPNIKQLDQS LDPGHARLMEIDNVGALIGAVQMGSVEFHTWGATSDKIETPDLFVLDLDPDPALPWKAMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLIVPLARRDNWE TVKAFAKGIAQFMTEQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPVSREELEGLRGAQQWTVANVLQRLNALKADPWAGYA NRQKISKKMWDKLGAHPPE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site