Pseudomonas simiae 2-36, LS88_RS23925
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain 2-36 scaffold10.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TATCCCCCGCCAACGCCTGCACACCAGCGGCCTGGGCGGCATCGCCTGCGATTGGCCACGTGCCTGGCGCGAAGGCACGGCGGTTGATCTGCACATCCCC TCCCTGGGCGCCAGCGCGCGTTATCCGGGCTATGTGGCGTGGTGCCGCAAGGTGGAAACCGGCTACCGCGTCGGTATCTCGTTTACCGACGAACATGCCT TGTTCGGTGCCCGCATGGGTGAGCAAGCATGCCGGATACAGCGCTATTGCCGCCAGCACGAAGATGCCGAGCCGACACCCCAGCAACTCGAAGCCCTCGC CCGCGAGTGGGTATCGCGCCATGCGGGCGAGTTCTCCCATGAGGCCTTTGTGGCGCCAGCACTGGATTAAAGCGGGCTTTGCCCATTGTCGCGGGCCCGT GTTACGCGCTAAGGTTCCTCCCCCTGCATTCAAATCATGCTGTGCTCCGCCGCACGGGGATGGCTGGCGGCCGGCACCCGTGACCCTGACGAGTAACACG
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| DNA Sequence for Gene |
>LS88_RS23925
ATGGCTGATTTACCGATCAATGACCTAAACGTCGAATCCAACGAGACCCTGATCACACCCGATCAGCTCAAGCGCGAAATCCCCCTGAGCGACGCTGCCC TGCAGACCGTCACCAAGGGCCGCGAAGTCATCCGTGACATTCTCGACGGCACCGACCACCGCCTGTTCGTTGTCATCGGGCCTTGCTCGATCCACGACCT GAAGGCTGCCCACGAGTACGCCGAACGCCTGAAAGTACTGGCGGCGGAAGTGTCCGACACGCTGTACCTGGTGATGCGCGTCTATTTCGAAAAACCGCGC ACCACCGTCGGCTGGAAAGGCTTGATCAACGACCCGTACCTGGACGACTCGTTCAAGATCCAGGACGGCTTGCACATCGGTCGTCAATTGCTGCTGGACC TGGCCGAGATGGGCCTGCCCACTGCCACCGAAGCCCTGGACCCGATCTCCCCGCAGTACCTGCAGGACCTGATCAGTTGGTCGGCCATCGGCGCACGTAC CACCGAATCCCAGACTCACCGTGAAATGGCGTCCGGCCTGTCCTCGGCCGTGGGCTTCAAGAACGGCACCGATGGCGGTCTGACCGTGGCGATCAACGCG CTGCAATCGGTCTCCAGCCCACACCGCTTCCTGGGTATCAACCAGGAAGGTGGCGTGTCCATCGTCACCACCAAGGGCAACGCCTACGGTCACGTGGTAT TGCGTGGCGGCAACGGCAAGCCCAACTATGATTCGGTCAGCGTTGCGCTGTGCGAGCAGGCGTTGAACAAGGCGAAGATCAAGCCGAACATCATGGTCGA CTGCAGCCACGCCAACTCCAACAAGGACCCGGCTCTGCAGCCGTTGGTGATGGAAAACGTTGCCAACCAGATCCTGGAAGGCAACCAGTCGATCATCGGC CTGATGGTCGAGAGCCACCTGAACTGGGGTTGCCAGGCGATTCCAAAAGACCTGGCCGACTTGCAGTACGGCGTGTCGATCACCGATGCCTGCATCGACT GGTCCGCCACCGAAAACACCCTGCGCAGCATGCACGCCAAGCTCAAGGACGTATTGCCTAAGCGCAAACGCACCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTTAAACTGCGCACACAAAAACGCCGGGCTCAGCCCGGCGTTTTTCATTGCATTGTCTATGTCTTACAGCTTGGCGGCATGGCGCTGGTGGCGCTCCATG TAGCGTTCGACGTAGGAGCAGGACGGGATCACCGTGTAACCGGCCTCTTCGGCGAACTTCAAGGCTTCCTCGGTCAATGCCGCCGCAATCCCACGGCCCC GCAGCGCGTTGGGCACGAAGGTCCGATAGATGTCCAGGGTCTGTTTGCCGAGGTCCATATAGGTCAGATAGGCACGATGACCGTCCACATTGGTCTCGAA CTGATGACCAGCCTGGTCATGGTGGATGGACAACGCCTCGCTCATCACTACTCCTCGCGGGTCTTGGTTTCTGACCCCTACCTTACCGATGTTTTTCCGG CGAAGGAACATCTACGCCACCCCGTGCCGGTTTCGACAACGAGAAAACCCTGAGCGCTTACAACCAGCACGTAGGGAATAGTAGGCACCAATCCTGAAAT
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| Amino Acid Sequence |
>phospho-2-dehydro-3-deoxyheptonate aldolase
MADLPINDLNVESNETLITPDQLKREIPLSDAALQTVTKGREVIRDILDGTDHRLFVVIGPCSIHDLKAAHEYAERLKVLAAEVSDTLYLVMRVYFEKPR TTVGWKGLINDPYLDDSFKIQDGLHIGRQLLLDLAEMGLPTATEALDPISPQYLQDLISWSAIGARTTESQTHREMASGLSSAVGFKNGTDGGLTVAINA LQSVSSPHRFLGINQEGGVSIVTTKGNAYGHVVLRGGNGKPNYDSVSVALCEQALNKAKIKPNIMVDCSHANSNKDPALQPLVMENVANQILEGNQSIIG LMVESHLNWGCQAIPKDLADLQYGVSITDACIDWSATENTLRSMHAKLKDVLPKRKRT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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