Pseudomonas simiae 2-36, LS88_RS19385
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain 2-36 scaffold7.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AATAAGTGTGAAATGAGCGGTGAAGGTCGACTGCGAAGGGTAAGTGCGCGATGGGTAAAGGTTTTTTGTCTTACAATTTTTGTACAGGTACAAAACAGGC GCGCACAAAAAAGGCCACTCTTTCGAGTAGCCTTTTTTGATGTTTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCT ACCAGACTGCTCCATCCCGCGTCTGTGTGTCGGCATTCTACAGAGGAACGCCGATGTGTCAACCTGTGAATTGAAGAAAAGCGCTTGTGGTTCAATCGGT TAGCTCTCCACAGTGGCCCCTCGATACCTCTCGGGCCCAGGCTGGCCGAGGGTTTCAGCTCTATCAGCGGGCCAAACTCGATTGAGAAAATAAATTCATC TGGGAGTTTTCCTACCGCTCAAGCGGAAGATTCAAACTACTGGTGCTATATACAGGTGCGAATGCGATACTGGCTACCCGTAGGTACACACCCCGTTTAT
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| DNA Sequence for Gene |
>LS88_RS19385
ATGACACAGCGCAAAATCATCCACGTCGACTGTGATTGCTTCTACGCCGCCATCGAGATGCGCGATGACCCGAGCCTGGCGCAAAAGCCACTGGCGGTGG GCGGTTCGGCGGACCGGCGCGGGGTGATCGCGACCTGCAACTACGAGGCACGTGCCTATGGCGTGCGCTCGGCCATGTCGTCACGCCATGCCTTGAAGCT GTGCCCGGACCTGACCATCGTCAAGCCGCGCATGGAGGCTTATAAGGAAGCGTCGAAGGAAATCCAGACGATCTTTCGCGACTACACCGACCTGATCGAA CCGTTGTCGCTGGATGAAGCCTATCTGGACGTGTCCGACAGTTCGCATTTCGGCGGCAGTGCCACGCGCATTGCCCAGGATATTCGCCGCCGTGTTTCCA ACCAATTGCACATCACCGTGTCCGCCGGCGTGGCGCCGAACAAATTCCTGGCCAAGATTGCCAGCGATTGGAAGAAGCCCAACGGACTCTTCGTGATCAC TCCGGACCAGGTCGAAGACTTCGTCTCGCAATTGCGTGTGAGTAAGTTGCACGGTGTGGGCAAGGTGACGGCTGACAAACTGGCGCGCCTGGGGATCGAA GACTGCCTGCAGTTGCGCGAGTGGAACAAGCTGGCGCTGGTGCGCGAGTTCGGCAGTTTTGGCGAGCGGTTGTGGAGTCTGGCCCGTGGGATCGATGATC GTGTGGTGCAGAACGACAGTCGCCGGCAATCGATCAGTGTGGAGAATACCTACGACGTGGACCTGCCAGATCTTTCAAGCTGTCTGGCCAAGCTACCTGA GCTGATGGAAACCCTGGCTGGACGTATGGCGCGTATCGACAGCAGTTATCGTGCGGGCAAGCCGTTCGTGAAGGTGAAGTTTCATGACTTTACCCAGACG ACACTGGAACAGGCGGGGGCGGGGCGGGACTTGGAGAGTTATCAACAGTTGCTGACGCAGGCGTTCAACCGGGGTGGGAAGCCGGTGCGGTTGCTGGGTA TTGGCGTGCGGTTGCTGGATTTAAGCAACGGCAACGAGCAACTCGAATTCTCCTGGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAACCGAAAACCAAATGTGGGAGCGGGCTTGCTCGCGAATACGGCGTGTCAGTCAATGTTGTCGTGACTGACCCACCGCATTCGCGGGCAAGCCCGCTCC CACATGTAGATCTACAACGTTCTTGAAGCCCTAGCGAGCGCCTGGATCGGCAACGAGACGCCCCGCATCCTTGGTCAGCGCCTGCAGGAATTCCTGCTGC AACTCGGGATCATTGCGGGTCAGTTCGATCAGGCTTTGTTCCAGTTCGCTGGCTTCTTCTTCCAGGCCCAGTTCAGACAAGCGTTTGACCCGATGTACCC ACTGGCTGACTTCGTCGTCTTCCAAGTCGTCGTAGATCAGGCCGTGGGCTTCCAGCAGCTTGTTGCGCAAGGTGCTGCTGACAGCCAGCGTGGAATCCGA ATGCACGTCGTCCTGGCCGTCTTCCACGCTGATCTTCAGCGTGGTGATGCGGTTCAGGTCTTGCTCGGCAAACGGGCTGTCCAACAGGTTCAGGCGCAAG
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| Amino Acid Sequence |
>DNA polymerase IV
MTQRKIIHVDCDCFYAAIEMRDDPSLAQKPLAVGGSADRRGVIATCNYEARAYGVRSAMSSRHALKLCPDLTIVKPRMEAYKEASKEIQTIFRDYTDLIE PLSLDEAYLDVSDSSHFGGSATRIAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEDFVSQLRVSKLHGVGKVTADKLARLGIE DCLQLREWNKLALVREFGSFGERLWSLARGIDDRVVQNDSRRQSISVENTYDVDLPDLSSCLAKLPELMETLAGRMARIDSSYRAGKPFVKVKFHDFTQT TLEQAGAGRDLESYQQLLTQAFNRGGKPVRLLGIGVRLLDLSNGNEQLEFSW
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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