Pseudomonas simiae 2-36, LS88_RS17790
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain 2-36 scaffold6.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGGCTCGGAGGACCTGGCCAATGACGTATTGCACGAGACCTACCTGCGGGTCGATCGTATGGAAGTGCCGCCAAACCTGGCGCAACCCAACGCGTACCTG TACCGCATGGCCTTGAACATCGCCGCCGACCGCCGCCAGGCCGACGCGCGTTTGCTCACTGGCAGCGAGGTCGAAGAACTGCTGCAAAGCGCCGACGAAG CCCAGGACCCGTCTCGGGTGGTGGGCGGCCAGAAAGAAATCCAATCCCTGGTCAAGGCGCTGTATGAACTGCCGGCACGCCGCCGCAAAATCCTCATCGC CGCCCGCCTGGAAGAGGCGCCGCACCTGGAAATCTCCCAGCGTTTCGGCATTTCCACGCGTATGGTCGAGAAGGAAATCAAGGCCGCCCTGGGCCACTGT GCCAAGCGCCTGGAAAGAAAAGTGATTCAGCGGTTCGGTCCCGGTGCCGGAAAACCGTCTTAGTGTCGAGTCCCTGATAAATCCGTGAGTACGTGCGCGC
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| DNA Sequence for Gene |
>LS88_RS17790
TTGAATATTTTTAACCTCTCCACCGCCCGGCCGTCCGCCGCCAGCCCCCTGCACGATGAAGCCCGCGAGTGGCTGGTCCTGTTGACCTCGGGGCGTGCCA CCGTGGCCGATGCCAAGGCGCTCAAAGCCTGGTGCGCGCAGAGCCCGGAACATGCCCAGGCATTCGAGCAGGCCAAGGCGCTGTGGCAGCAATTGGCTCC GGCTCTGGAGCACGTCTCGCCACCGCGCAGCTTTGGTCGTCGCGCCTTCCTGGGCGGTGCGATCGCCGCATCGGCGGCTGTGGTGATGGTGCGCATCGGC GTACCCGGTGGCTTTGCCGGGCTTACGGCGGACTACCGCACCGAAGTCGGCGAGCAACGCCAAGTGGTGTTGAGCGAAGGGATCAGCCTGGAACTCAATA CCCAGACCCGCATCAGTCGGGTGGGGCAGGGCATTGAATTGCTCGAAGGTGAAGTCGAGGTGGTTACCCACGTTGCACAACCGCTCAAGGTCCAGGCCGG CGAAGGCTGGGTGAGTGCGGCGCAGGCGCGGTTCAATGTGCGTCATACCGATCACACGGTCTGTGTCACCTGTATCGAGGGTTCGCTGTCGGTGGACGTT GCCGGCAACAGTGTGAGCCTGGGCAGTGGTCGACAACTGACCTATGGCAGCGCCGGGGTCAGTGAAGTGATCACGGTGGATACCCAGGCAGTGGTGGCCT GGCGTGAGCAGGTGCTGGTGTTCAACAACGCCACGCTGGCGACGGTGGTGGATGAGATCAATCGCTACCGGCCGGGGATGCTCGTGTTGCTGAACAACGA GCTGGGCCAGCGCCGCGTGCAGGCGCGGTTCAGCCTGCAACAGCTGGCCGGGGTAGCGTTGTTGATTCGCGATGCGTATGGCGCCAAGTGTACGGAATTG CCGGGTGGGGTGGTGTTGTTGAGTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCAACGGCCCCACCACCTGTCGATACCGTTCCACCCCCTGCGGCGTCTGTCGCACCAGGCTGATCTCCAATCCCAGTGGATCCTCGCGACGGTTACCGC TCAACTGTCGCCACCCCTTATCGGCTTCCCAAACCCGCACCTGCAAATCACTGACGCCGGTTAACACCACCACCCCATCCTTTGCCGCCGGCAGAGGAAA GCGGTCCCGCGCTGGGGCCGCTGCCCGATACAGCGAATCGCCCTTGAGCCACCACCGCACCCGTTGCAGCCCATCGCCTGCGACCGGGGCGCTGCGGATC ACGTCCAGTCGAAAACCCTTACTGTCGGAACTGCGCACCGTGACTGCCGCCAGCCCCTCGGTTTTAGCCTCCCCGTCTTCCGGCGCGCTGGGGAGGGTGA GTTCGACACTGGCCCGTAAACTGATGTCCCGCTGCATCTGGTTCAATGCCCTCAGCAGCACCTCGGTCTGTTCCGTACTGGCCTGCAAGTGCTGATCGGC
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| Amino Acid Sequence |
>iron dicitrate transport regulator FecR
MNIFNLSTARPSAASPLHDEAREWLVLLTSGRATVADAKALKAWCAQSPEHAQAFEQAKALWQQLAPALEHVSPPRSFGRRAFLGGAIAASAAVVMVRIG VPGGFAGLTADYRTEVGEQRQVVLSEGISLELNTQTRISRVGQGIELLEGEVEVVTHVAQPLKVQAGEGWVSAAQARFNVRHTDHTVCVTCIEGSLSVDV AGNSVSLGSGRQLTYGSAGVSEVITVDTQAVVAWREQVLVFNNATLATVVDEINRYRPGMLVLLNNELGQRRVQARFSLQQLAGVALLIRDAYGAKCTEL PGGVVLLS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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