Strain | Pseudomonas simiae strain 2-36 scaffold6.1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
ATTTCAAGATCTATCGCCTGGCCTTCTCGCTGGTCTCGGAGACATTCATCAGCGACTACCTGGCCGACCTCAGCAACGCGCCGGACATCCAGCCGGTGTT CCGCCATGTGGTAGCCCTGCACAAAAAAGACGAACTGGTGCACAAGCACATCTTTCCGCTGTTCGTGCAGCAGGTCGTCGGTGGCTTCACCGCGCAGCAA ACCGCCTTGTTCACCCGCGGCATCGCCAACTCCATCCGGATCTTCCCGATGCGCGAGATTTCAGCGTGGCGAATCATCCTGCCGCAACTGCTCGAAGTAT TCGGCGATCCCTCGCTGCTGCTACCGACTCAATTTACCGAGACCGGCGAAGCGGACTACTCGGCCATGCCCGAGATCCTCAGCTCCATCGGCATACACCC CGAAGCGGTGCTGCCCGAGTTGCAGGTGATGAACGAACCGGTCACCACCGTTTGAAACCAGCGTGCTGCTGATCACTACAAATTCAATAGAGTAATTGTC
|
|
DNA Sequence for Gene |
>LS88_RS17605
ATGTGTGGATACATTGGCGTCTTTGCCAAACAACCTCGTGCGTTCAACCCGAACATGTTCGATGCCGCCCTGCGTGCCATCCATCATCGCGGCCCGGACA GCTCCAGCCAATGGTTCGACCCCAAGGGCCAAGCGGCCTTTGGTTACGTACGCCTGGGCCTGGTCGGCCTGGGTAACGGCACCCAGCCTATCGTTGCCGA CGAAGGCGACCTGGTGATGATGGTGAACGGCGAGTTCTATGACTATCAACGCATCCGCACCGAGCTGGAAGGCTACGGTTGCCGCTTCAAGACCTCGTCC GACAGCGAGATCGCCATGCACTTGTACCGCCGCCATGGCGTGCGTGGCCTCAAACAACTGCGCGGCGAGTTCACCATCCTGATTTTCGATCGCTTGCGCA AAAAGCTGTTTGCCGTGCGCGACCGGGTGGGCGTCAAGCCGCTGTACTACACCGAACATGAAGGTGCCTGGTACTTCGCGTCCGAGATCAAAGCCTTGCT TGCAGCCGGCGTGCCGGCACAGTGGGACCACGAAGCCTACGCCAATCGCGGCTTTATCCTGCGCGACCGTACCGTGTTCAACAACATCCGCAGCGTGAAA CCGGGTTGCTGGATTATCGCCGACGAAAGCGGCCTGCAGACCGAACAGTACTGGGACTGGGACTTCCCGGATGCCGAGGCGACCGAACAGCGCAGCGAAG CCGAGATGATCGAGTCCCTGCGTAACACCATCGAGGAGTCCGTACGCCTGCGCCTGCACGCCGATGTGCCGGTGGGCGTGTGCCTTAGCGGCGGCCTCGA TTCGTCGGCCATGCTGGGCATCGCCACCGAGTTGACCGGCCAATCTTTGCAGGCGTTCCACTTGTCTTTCGAGGGCGAGCAAGCCTACGACGAACGCCAG TACGCCGAAGTGGCCGCCCGGCATAACCGCGCCCACCTCAACGTGCTGTCGGTGAACTCTTCCGACATGGCGGACAACTTCGAAAATGCCCTTTGGCACG CCGAAATGCCCTTCGCCAACGCTCACAGCGTGGCCAAGTACCTGCTGTGCAAATACGTGCAGAACCAGGGCATGCGCGCCGTACTGACCGGTGAAGGCGC CGACGAAGTCTTCGGCGGCTACCCGCATTATCGTCGCGACATGGTGCTGTACAACCATGAAAACCAGGACCCGTCGGCGATTGCCGAACTCAGCCGACGC CTGCACGCCAGTGAAGACCGTTACCTGCCTGGCGGCAAGAATGACGTGAAATGGGTACAGGACGAGCTGGGCCACGGCGTGTCCTGGCTGCAAACTCAAT CGGCGTTGTTCGGCCCCCTGGCGCAACTGTACAGCGACGATTTCCGTGAGCGTTTCAGCCATACCGATGCCTATCGCGAGTTCTACGACCGTCTGAGCCC ACGGGCACTCAACGGCTGGGAGCCGGTGAACCGCTCGTTGTACATGGTCGCCAAGTCCAGCCTGCCCAACGTGGTGCTCACCTCCCTGGGTGACCGCATG GAAATGGCCGGCAGCCTGGAAGGCCGCCCACCGCTGCTCGATCACCAAGTGATCGAGGCCGCGTGCCGCCTGCCGGTGAACATGAAAGTACGCGGCGCCA CCGAAAAGTACGCCCTGCGCGAAGCCATGCGCCCTTACGTGCCCCAGGCTGTGCTGGATCGCAAGAAGCAGTACTTCCGCGCGCCACCGGCGTCCGAAAG CCCGCAATCGAAGCTGTATGAAATGATCAACGATGTGTTGAGCGGCCCGGCATTGAATAACGTGCCGTTCTTCGATCCGCGTAAAGTGCGCGCGTTGCTG GCAACCCTGCCAAGCTTGTCCACCGCCCAACGCGCCTCGGCAGACAACCTGCTGATGGAAATCGCCGGGCTGTGCCTGATGCAAAAACGCTTCGCCTTGA ACTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
CTTCCTGGCGGCACATCGCGATCGCGCTGTGCCGCCTGACCCAAGGAGGGTCCATGCTGAAAAAACATTTGTTTCTGGCCGTGCTCGTTACCCTGGTGTG GGGGGTCAACTTCCCGATCACCAAACTGGGCCTGCGCGCCATCGATCCGTTTGTACTCACGGGCATCCGCTTTGCCCTCGCCGCCCTGCCCCTGGTGTTC TTTATCAAACGCCCCGCCGTCAAGTTCAGCTACGTGGCCGCCTACGGCTTTATCTTCGGGCTGGGCATGTGGGGCGTGATCAACTACGGCATCCAGGTGG GCGTGAGTCCCGGTATTGCGTCGTTGATCATTCAGCTCAGCGTGTTCTTCACCATGGGCTGGGGCTTTGTGCTGTTCAAGGAGAAAATCCGTGGTGCGCA GATGATCGGCGCCGTGCTGGCCTTGATTGGCCTGGCCGGGATCATCTCCACTCAGGAAGGCAACCATGCGGTGCTGGGCGTCCTGCTGATCGTACTCAGT
|
|
Amino Acid Sequence |
>asparagine synthase
MCGYIGVFAKQPRAFNPNMFDAALRAIHHRGPDSSSQWFDPKGQAAFGYVRLGLVGLGNGTQPIVADEGDLVMMVNGEFYDYQRIRTELEGYGCRFKTSS DSEIAMHLYRRHGVRGLKQLRGEFTILIFDRLRKKLFAVRDRVGVKPLYYTEHEGAWYFASEIKALLAAGVPAQWDHEAYANRGFILRDRTVFNNIRSVK PGCWIIADESGLQTEQYWDWDFPDAEATEQRSEAEMIESLRNTIEESVRLRLHADVPVGVCLSGGLDSSAMLGIATELTGQSLQAFHLSFEGEQAYDERQ YAEVAARHNRAHLNVLSVNSSDMADNFENALWHAEMPFANAHSVAKYLLCKYVQNQGMRAVLTGEGADEVFGGYPHYRRDMVLYNHENQDPSAIAELSRR LHASEDRYLPGGKNDVKWVQDELGHGVSWLQTQSALFGPLAQLYSDDFRERFSHTDAYREFYDRLSPRALNGWEPVNRSLYMVAKSSLPNVVLTSLGDRM EMAGSLEGRPPLLDHQVIEAACRLPVNMKVRGATEKYALREAMRPYVPQAVLDRKKQYFRAPPASESPQSKLYEMINDVLSGPALNNVPFFDPRKVRALL ATLPSLSTAQRASADNLLMEIAGLCLMQKRFALN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|