Pseudomonas simiae 2-36, LS88_RS17235
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain 2-36 scaffold4.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATCCAGCAGATCGCTGCACCGCGCACCTTGTATGAAGAACCGAAGAACACCTTTGTCGCCAACTTTATCGGCGAGAACAACCGCCTCAATGGCCGCCTG CACAGCCATAGCGGCGAGCGCTGCGTGGTGGAGCTGGCGCGTGGCGAGAAGGTCGAGGCGCTGGCGGTCAACGTCGGCCAGGTGGGTGGCCCGGTGACGC TGTCGGTACGCCCTGAACGCGTCAGCCTCAATGGCTCCAGCGAATCTTGCGTCAACCGCTTTTCCGGGCGGGTGGCGGAATTCATCTACCTGGGCGACCA CGTACGTGTGCGCCTGGAAGTCTGCGGCAAGGCCGATTTTTTTGTGAAACAACCGATTGCCGAGCTGGATCCAGCCCTGGCGGTCGGCGACGTGGTACCG ATTGGCTGGCAAGTCGAGCACGTTCGCGCACTCGACCCACTTTTAGAGGCGAATTGATCGCCCCCTGGCTTCACCAACCCTGCACGTGGAGAGAACAACA
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| DNA Sequence for Gene |
>LS88_RS17235
ATGTTGAGTTCCTTGAAGTATTCCGTTTTGGCATTGAGCTTGATGGGTGCGACACAGGCCATGGCAGGCCCGGATCTGACGGTCGTGTCCTTTGGCGGCG CGAACAAGGCGGCCCAGGTCAAGGCCTTCTATGCACCGTGGGAAAGCGCGGGCAACGGCAAGATCGTCGCCGGCGAGTACAACGGTGAAATGGCCAAGGT CAAAGCCATGGTCGACACCAAGAGCGTGTCCTGGGACCTGGTGGAAGTGGAGTCGCCGGAACTGTCCCGCGGCTGCGATGAAGACATGTTCGAGCCCCTG GATCCGAAACTGTTCGGCAACACGGCTGACTACGTGAAGGGTGCGATCCAGCCGTGTGGCGTGGGCTTCTTCGTGTGGTCGACGGTGCTCGCCTACAACG CCGACAAGCTGGCATCCGCGCCAACCAGCTGGGCGGATTTCTGGGACACCAAGAAATTCCCTGGCAAGCGTGGCCTGCGCAAAGGCGCCAAGTACACCCT GGAATTCGCCTTGATGGCTGACGGCGTTGCACCGAAAGACGTGTACAAAGTGCTGGCCGGCAAAGACGGCCAGGACCGCGCGTTCAAGAAACTCGACGAG CTCAAGCCGTCGATCCAGTGGTGGGAAGCCGGCGCACAACCGCCGCAGTACCTGGCCTCGGGTGACGTGGTGATGAGCTCGGCCTACAACGGCCGCATTG CCGCCGTGCAGAAAGAAAGCAACCTGAAAGTGGTGTGGAACGGCGGCATCTACGACTTCGACGCCTGGGCCATCCCTAAAGGCCTGGCCAAGGATCGTGC CGAAGCTGCGAAAAAATTCATCGCCTTCTCGGTGCAGCCACAGCAACAGAAGACCTACTCGGAAAACATCGCCTACGGCCCGGCCAATACCCAAGCCGTA CCGTTGCTGGCCAAGGACGTGCTGAAGGACATGCCGACCACTCCGGAAAACATCGCCAACCAGGTGCAGATCGATGTGAGCTTCTGGGCGGATAACGGCG AGCAGCTGGAGCAGCGCTTCAACTCCTGGGCTGCCAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CACTGCATAACCCTGTGGGAGGGGGCTTGCCCCCGATGACGGCGGTCCAGTCGATATATGTGTTGACTGAAAGTCTGCCATCGGGGGCAAGCCCCCTCCC ACAAGGGATTTCTTGTGTGTGAAAGGTTGCATTCATTTTCAAGATTCGGAGTCAGCCATGGCCATCGCCGTTCCCTCGAACGAGGTCAGCAGCCCCACCC TCAAGCAGCGCCTGGCGCGTGCCGAGCGGCTCAACCGCTGGAAGGCCCAGGCCTTGATTGCGCCGCTGGTGCTGTTCTTGCTGCTGGTGTTCCTGGTGCC GATTGTGGCGCTGTTGTTCAAAAGCGTCGGCAACCCGGAAGTGGTAGGCGGTTTGCCGCGTACCGTAGTGGCGGTGACGGCCTGGGATGGTCGGGGCCTG CCGGGCGAGCCGGTGTACCAGGCCCTCAGTGAGGACTTGAGCGAAGCCCGCCAAAACCAGACGTTGGGCGATCTGTCCAAGCGCTTGAACATGGAACTGG
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| Amino Acid Sequence |
>spermidine/putrescine ABC transporter substrate-binding protein
MLSSLKYSVLALSLMGATQAMAGPDLTVVSFGGANKAAQVKAFYAPWESAGNGKIVAGEYNGEMAKVKAMVDTKSVSWDLVEVESPELSRGCDEDMFEPL DPKLFGNTADYVKGAIQPCGVGFFVWSTVLAYNADKLASAPTSWADFWDTKKFPGKRGLRKGAKYTLEFALMADGVAPKDVYKVLAGKDGQDRAFKKLDE LKPSIQWWEAGAQPPQYLASGDVVMSSAYNGRIAAVQKESNLKVVWNGGIYDFDAWAIPKGLAKDRAEAAKKFIAFSVQPQQQKTYSENIAYGPANTQAV PLLAKDVLKDMPTTPENIANQVQIDVSFWADNGEQLEQRFNSWAAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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