Pseudomonas simiae 2-36, LS88_RS16340
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain 2-36 scaffold4.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGAGCAGACCACTACCGAGGTGGTGCGCGGTGCGCGGCTGGCCCAGGACGCCGGGGTGGCGCTGGAAGAGATCGAAGGCGTGTCGAAAACCCTGGCGGCG CTGATCCAGAGCATCTCCAACGCGGCGCAGCAACAGACCTCGTCGGCGGGGCAGATTTCCCTGACGATGAATGTGATCCAGCAGATCACCACCCAGACCT CGTCGGGCTCCACGGCGACGGCTGAAAGCATTGGCAACCTGGCGAAAATGGCTAGCCAGTTGCGCCGGTCGGTGTCGGGGTTCACCCTCCCGCCGCCCAA GCAGGTCAATGATTGAAATGCTATCTGAAGAACACCACAGTCCAACTGTGGGAGCTGGCTTGCCTGCGATAGCGGTCTGTCAGATACAGATGTGTTGCTG ACCCACCGCTATCGCAGGCAAGCCAGCTCCCACATTTGATCTCCACCAGTCGGGAGATCTTGGCAACATCAGCAACCCACGAATTCTAAGCGGAGCAGTT
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| DNA Sequence for Gene |
>LS88_RS16340
ATGGTTGATCGGCACGACTACGTGGCCCTCGAATGGGTCAAGGGCGACATTGCCGAAACCCTGAAACAGGCCCGTTCGGCGCTGGACGCGTATGTCGAAA CCAGCGACGGCGACGCCATCAGCGAGTGCCTGGCCGCTGTCCACCAAGTGCATGGCGCGTTGCAAATGGTCGAGTTCTACGGCGCAGCCTTGCTCGCCGA GGAAATCGAAGCGCTGGCCCTGGCCCTGCAAGCCGCAGGCGTGAGCCAGCGCGATGAAAGCATCCGCCTGCTGCAACAGGCCCTCAACCAGTTGCCGCTG TACCTAGACCGTGTGCACAGCGCCCGCCGCGACCTGCCGCTGGTGGTGTTGCCGCTGCTCAATGACCTGCGCAGCGCGCGCGGCGAAAGCCTGCTGTCGG AGACCAGCCTGTTCAGCCCGCAACTGCTGACGATAGCGCCGCTGCCCGACGAGGCCCTGGCCCAACGCGCGGTGCCCGACCTGAAAGAGCAACTGCGCCA GTGGCATCAACTGCTGCAACAGGCCCTTGCCGGGCTGCTGCGCGAAGATCATGGGCCCAGCAACCTGGAAGACATGGCGCGGGTGTTCGCGCGCCTTGAA ACGCTGTGCCAAGGCGCGCCGCTGTTGCCGCTGTGGCAAGTCACCTCGGCCCTGGTCGAAGGCATGCTCACTGGCGTGATCGCCAACAGCCCGGCGCTGC GCAGCCTGCTCAAGGCCAGCGACAAACAACTCAAGCGCCTGCTGGCCCAGGGCATCGGCGGGATCAACCAGCCGGCACCGGATGAGCTGCTCAAGAGCCT GCTGTTCTATGTCGCCAAGGTCACCCGGCCGACGCCGCGCATGCAAAGCCTGAAAGAGCGCTACGGCCTGGATGAAGCCTTGCCCGACAGTGCGTTAGTC GACGCCGAACGCGCCCGCCTGGCCGGGCCGGACCGCAACGCCATGGGCTCGGTGCTGGGGGCCTTGTGTGAAGAGCTGGTGCGGGTCAAGGAACGCCTCG ATTTGTTCGTACGCAGTGACCGCCAGCACACCAGCGACCTCGATGCGTTGCTCGCGCCGCTGCGGCAGATCGCCGATACCCTGGCGGTGCTGGGCTTCGG CCAGCCGCGTAAAGTCATCATCGACCAACTCGCCGTGGTGTTGAGCCTGGTTCAAGGCCAACGCGAACCCAACGACGCAGTGCTGGTGGACGTCGCCGGC GCGTTGCTCTACGTCGAAGCCACACTGGCGGGCATGGTCGGTACCGTCGAGCCAGAAAGCCGCGAAGAAAACCGCCTGCCCACCACCGACCTGACCCAGA TCCATCAGCTGGTGATCCGTGAATCCTGCCAGTGCCTCAAGCAAGCCAAGGAGCTGGTGATCGACTGCATTGAAGCCGACTGGGACCGCCAACGCCTGGA GTCCCTGCCGGAGCTGCTGAGCCAGGTGCGCGGCGCTTTGGCGATGATTCCGTTGCCCCGCGCGGCAAGCCTGATGCGCGGCTGCACGGATTATGTTGAT GAACAGTTGATGGGTAACGACGCACCACCCTCCGAGGGGCAACTGGCGCATTTCGCCGACGTGATCAGCAGCCTGGAATACTACCTCGAACGGATGCTCC AAGACCCCGATGCCGCAGGGGAACGGGTGCTGGAGCTGGCCACGCACGGCCTGGCGGCGCTGGGTTACCTGCCTGCCGAGAAACCCTGGCGCCAAGCCCT GGTTGCACCGGACGGAGCACGTGCGGTGGAGGTTACGCCGAGCCAGTCGCAGTTCGACGCGCTGGCCAGTCCCACGTCGCGCCTTAACCCGCCCGCCCTC CAGCGCCCCGGCAGCCTGCTGCCGCCGCCGGCCGATGAAGAACCCATCGACGATGAACTGCGCGAGGTCTTCCTTGAAGAGACCGACGAAGTGCTTGAGG TGCTGCACCGCAATCTACCCAACAGCGCGGACAAAATCGCCCAGGGCGAAATGCGCCGTGCCTTCCACACGCTCAAGGGCAGCGGCCGCATGGTCCGCGC CCTGGTCTTGGCCGAGCTGGCCTGGGCGGTGGAGAACCTGCTGAACCGTGTGCTCGAGCGTAGCGTGACCCTTGGCCCCGACGTGCAGCAGGTACTGGAT GAAGCGGTGGCCTTGCTGCCTGAGTTGATCGCTGACTTTGCCATCGACGACCAGCGCCAAAGGGATGAGGTCGACGCCCTGGCCGCCCGCGCCCACGCCT TGGCCAGCGGCATGCCGGTGCCGGCCGCCGAGCCTCATGACCCGATGCTGCTGGAGATCTTCCGCAACGAAGCCCAGAGCCATCTGGACAGCCTCAATCA CTTCCTGCACCAGGCCGCCGAGCACGTGCCATTGCAAGTCAGCGATGAACTGCAACGCGCCCTGCATACCCTCAAGGGCAGCGCCTACATGGCGGGCGTG TTGCCGATCGCCGAGCTGGCCCGCCCGCTCGACCACCTGACCCGTGAATACAAGGCCCACCGCCTGCCGCTGGACCTGGACGAGGTGGAGTTGCTGTTGG AAGCCGAAGGTCTGTTTCAACGGGGTTTACGCGATCTGGACAGCGATCCCCTGGCGCCGATCAAAGGTGCAGAGGACTTGATCAACCGTACCCAAAGCCT ACTGGATCATCAGCTTGAAGCGCTGCTCGACGTGCGCATCAAGCGCGACCCTCAGCTGATCGCCAACTTCCTCGCGCAGGGCATGGACATCCTGCTCGAT GCCGAAAACCTGCTGCGTCGCTGGCAGCAACACCCCGGCGAGCGCCAGGAACTCACCGCGCTACTGGACGAACTGACCACCTTGGGGGAGGGCGCACACG TCGCTGACCTGCACGCCATCGATGCACTGTGTGAAGCCTTGCTCGACCTGTATGGTGCTGTTGAGGAAAGCAGCCTGGCCGTCAGTGAGCGGTTTTTCCA TGAGGCCGAACAGGCCCATGAAGCGCTGATCAGCATGCTCGACCAACTGGCCGCCGGCCAGGAAATCAGCCCGGCGCCAGCCCGCGTCGAAGCCCTGCGC GAGCTGCTGGATGAAGCCCTCGACCCGTCCGCCACCGGCCTGATCAAAAGCGACGGCAGCCGGGTGTTGAGTGTTTCCGAACTGGGCGCCGCCACACAGC AGTTGGATCACGAAACGGAGAGGGACAACGAGATCGTCGAGATCTTCCTCGAAGAAGCCGTGGACATCCTCGACAGCGCCGGGCAGTCGCTCAAGCGCTG GTTGCTGGAGCCCGACAACGCCGCACCGCTGTCGTCGCTGCAACGCGACCTGCACACCCTCAAGGGCGGTGCGCGCATGGCTGAAATCGAGGCCATTGGC GACTTGGCCCATGAGTTGGAATGCCTGTACGAAGGGCTGGTGGACCGCCGCTACAGCTACACTGCCGAACTGTCCCACGTGCTGATGGCGAGCCATGAAC GCCTCGCCTTGCAGCTTGAAGAACTGCACCATCACCAGCCGCTGAGCGACAGTGCCGAACTGATCGCCAGGGTGCGGGCGTTGCGCCAGGGCAGCGCGCC AGCGGCACCGGCCGCCGCACCGCCAGCGTCCGGCGCCGACCCTGAGCTGCTGGATATCTTCCTCGAAGAAGCCGCCGACATCCTCGACAGTTCCAGTGCT GCGCTGTCGCGCTGGCAGGCAGAGCCGGGCAATCGCCAAGAAGTGGAAACCCTGCTGCGCGACCTGCATACCCTCAAGGGCGGCGCACGTATGGTCGAGA TCGCGCCCATCGGCGACCTGGCCCATGAGCTGGAGTTTCTCTACGAAGGCCTGTCCGCTGGTTTGCTCGCGCCGTCCCCGGAGCTGTTCGCGTTGCTGCA AGGCTGCCACGACCGTTTGGCGCAGATGATCGACGCGGTGGCGGATGGTTTGCCGGTCGGTTCGGTGGACAAGCTCATCGAGCGCATCAAAACCCTGGTA CATCCGAGCGACGAACCGGTGACGCCGGTGGCGCTGCCTGCAGGCAAGGCGGAGGCCGTCGTCGACCCGATGGCCGATATGGTGAAGATCTCTGCCGAGC TGCTCGACGACCTGGTCAACCTGGCCGGTGAAACCTCGATCTTCCGTGGCCGCATCGAACAACAAGTCAACGACGCACGCATCGCCCTCACCGAAGTGGA AACCACCATCGAGCGCATGCGCGACCAACTGCGACGTCTCGACACTGAAACCCAGGGCCGCATCCTCAGCCGCCAGCAAGCCGAAGCCGAGCGCCTGGGC TATGAAGACTTTGATCCGCTGGAAATGGACCGTCATTCGCAGTTGCAGCAACTGTCTCGCGCGCTGTCCGAGTCCGCCTCCGACCTGCTCGACCTCAAGG ACACCCTTGAGCGCCGCAACGAGGACGCCCACGACCTGTTGCAGCAACAGGCGCGCATCAACACTGAGTTGCAGGAAGGCCTGATGCGCACGCGCATGGT GCCGTTCGAACGCATGTTGCCGCGCCTCAAGCGCATCGTGCGTCAGGTGGCGGAGGAGTTGGGCAAAGACGTGGAGTTTATCGTCGGCAACGCCGAGGGG GAGATGGACCGCAACGTGCTGGAGCGCATGGCCGCGCCGCTGGAACACATGCTGCGCAACGCCGTGGACCATGGCTTGGAATCCCGCGACGCAAGGCTGT TGGCTGGTAAGCCGGAAAAAGGTCGCATCACCCTGGACCTGACCCACGAAGGCGGCGACATCGTCTTCGACATGCGTGACGACGGCGCCGGCGTTCCGCT GGAGGCCGTGCGGCGCAAGGCGATCAAGCGTGGGTTGCTCGACCCGAATCAAGACATCAGCGACCGCGACGTGTTGCAGTTCATCCTGCAACCGGGGTTT TCCACGGCGGAAAAGATCACGCAGATTTCCGGTCGCGGCGTGGGCATGGACGTGGTGCATGAGGAAGTGCGTCAGTTGGGCGGCTCGATGGTCATCGATT CGACGCCGGGCGAAGGCGTGCACTTTCGCATTCGCTTGCCGTTCACCGTGTCGGTCAACCGCGCATTGATGGTGCAGTGTGCAGACGACCAATACGCGAT TCCGCTCAACACCATCGAAGGCCTGGTGCGCGTGCTGCCCCATGAGCTGGCCGGGCACTATCAGCAAGACCCGCCGCGATATGAATACGCCGGGCAGCGC TACGAGCTGTTTTACTTGGGCGACCTGCTGCACACCGTCAGCCGCCCGAAACTGCTGGGCCACTATCAACCGGTCCCGGTGCTATTGGTGCAGTGCAACG AGCGGCGCGTGGCCATCCATGTGGACGCCATGGCCGGTACGCGGGAGATTGTGGTCAAAGGCCTGGGCCCGCAGTTTGCTGGTGTGCAGGGTTTGTCGGG TGCGACGATCCTGGGTGATGGCCGCGTGGTGCTGATTATCGACTTGCTGGCGCATATCCGTGCGCGGCAACCCGCGTTGCCGGCGCAAACGGCTGACCTG CCATTGATCCTCAACGACCCGCTGAAAAAGCGCCCGTTGCTGGTGCTGGTAGTGGATGATTCCGTCACCGTGCGCAAAGTCACCAGCCGTCTGCTGGAGC GCAACGGCATGAACGTCCTCACCGCCAAAGACGGCATCGACGCGCTCGCTGTGCTCGAAGAACACACCCCGGACCTGATGCTGCTCGACATCGAAATGCC GCGCATGGACGGTTTTGAAGTCGCCACCCAAGTGCGCAACGACCCCCGGTTGATGCGCCTGCCGATCATCATGATCACCTCGCGCACCGGCCAGAAACAC CGCGACCGCGCCATGGCCATCGGCGTCAACGACTACCTCGGCAAGCCGTACCAAGAGTCGGTGCTGCTCGAAAGCATTGCCTACTGGAGCAAGTCCCATG CTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCACCGCACCAGCCAACTCACCGGCCTGCTGCTGCCCCTGGCCGACCGCCATCTGGTGCTACCCAACGTCGCCATCGCCGAACTGATCGACTTTCAGCGC GGCGAACCGGCCAGCGATGCACCGCCGTGGTATTTGCGGCAAGTGACCTGGCGCGATCGGCAAATCCCGTTGATCAGCTTCGAAGCGGTGTGCGGCGAGG CGAGTGTGACCGGCGAGCGCTCGCGCATTGTGGTGTTGAATGCCTTGGGGGGGCGGCCGACGCTGAAGTTTATTGCGCTGGTGATCCAGAGCATTCCCCG GTCGTACAAGCTTGATAGTGAATTGAGCTACGTGGACGTGCCGCTGTGCCCGCTGGAACTGGCGGCGGTGCAGGTGGGCGAGCATGTGGCGAAGGTGCCG GATCTCATGGGGCTTGAGGCCCTGCTGGTCGAATCCGGTTTGGCATAGATCCCTGTAGGAGCCGGCTTGCCGGCGATGACGGTCTGCCAGCCCACTCATT
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| Amino Acid Sequence |
>histidine kinase
MVDRHDYVALEWVKGDIAETLKQARSALDAYVETSDGDAISECLAAVHQVHGALQMVEFYGAALLAEEIEALALALQAAGVSQRDESIRLLQQALNQLPL YLDRVHSARRDLPLVVLPLLNDLRSARGESLLSETSLFSPQLLTIAPLPDEALAQRAVPDLKEQLRQWHQLLQQALAGLLREDHGPSNLEDMARVFARLE TLCQGAPLLPLWQVTSALVEGMLTGVIANSPALRSLLKASDKQLKRLLAQGIGGINQPAPDELLKSLLFYVAKVTRPTPRMQSLKERYGLDEALPDSALV DAERARLAGPDRNAMGSVLGALCEELVRVKERLDLFVRSDRQHTSDLDALLAPLRQIADTLAVLGFGQPRKVIIDQLAVVLSLVQGQREPNDAVLVDVAG ALLYVEATLAGMVGTVEPESREENRLPTTDLTQIHQLVIRESCQCLKQAKELVIDCIEADWDRQRLESLPELLSQVRGALAMIPLPRAASLMRGCTDYVD EQLMGNDAPPSEGQLAHFADVISSLEYYLERMLQDPDAAGERVLELATHGLAALGYLPAEKPWRQALVAPDGARAVEVTPSQSQFDALASPTSRLNPPAL QRPGSLLPPPADEEPIDDELREVFLEETDEVLEVLHRNLPNSADKIAQGEMRRAFHTLKGSGRMVRALVLAELAWAVENLLNRVLERSVTLGPDVQQVLD EAVALLPELIADFAIDDQRQRDEVDALAARAHALASGMPVPAAEPHDPMLLEIFRNEAQSHLDSLNHFLHQAAEHVPLQVSDELQRALHTLKGSAYMAGV LPIAELARPLDHLTREYKAHRLPLDLDEVELLLEAEGLFQRGLRDLDSDPLAPIKGAEDLINRTQSLLDHQLEALLDVRIKRDPQLIANFLAQGMDILLD AENLLRRWQQHPGERQELTALLDELTTLGEGAHVADLHAIDALCEALLDLYGAVEESSLAVSERFFHEAEQAHEALISMLDQLAAGQEISPAPARVEALR ELLDEALDPSATGLIKSDGSRVLSVSELGAATQQLDHETERDNEIVEIFLEEAVDILDSAGQSLKRWLLEPDNAAPLSSLQRDLHTLKGGARMAEIEAIG DLAHELECLYEGLVDRRYSYTAELSHVLMASHERLALQLEELHHHQPLSDSAELIARVRALRQGSAPAAPAAAPPASGADPELLDIFLEEAADILDSSSA ALSRWQAEPGNRQEVETLLRDLHTLKGGARMVEIAPIGDLAHELEFLYEGLSAGLLAPSPELFALLQGCHDRLAQMIDAVADGLPVGSVDKLIERIKTLV HPSDEPVTPVALPAGKAEAVVDPMADMVKISAELLDDLVNLAGETSIFRGRIEQQVNDARIALTEVETTIERMRDQLRRLDTETQGRILSRQQAEAERLG YEDFDPLEMDRHSQLQQLSRALSESASDLLDLKDTLERRNEDAHDLLQQQARINTELQEGLMRTRMVPFERMLPRLKRIVRQVAEELGKDVEFIVGNAEG EMDRNVLERMAAPLEHMLRNAVDHGLESRDARLLAGKPEKGRITLDLTHEGGDIVFDMRDDGAGVPLEAVRRKAIKRGLLDPNQDISDRDVLQFILQPGF STAEKITQISGRGVGMDVVHEEVRQLGGSMVIDSTPGEGVHFRIRLPFTVSVNRALMVQCADDQYAIPLNTIEGLVRVLPHELAGHYQQDPPRYEYAGQR YELFYLGDLLHTVSRPKLLGHYQPVPVLLVQCNERRVAIHVDAMAGTREIVVKGLGPQFAGVQGLSGATILGDGRVVLIIDLLAHIRARQPALPAQTADL PLILNDPLKKRPLLVLVVDDSVTVRKVTSRLLERNGMNVLTAKDGIDALAVLEEHTPDLMLLDIEMPRMDGFEVATQVRNDPRLMRLPIIMITSRTGQKH RDRAMAIGVNDYLGKPYQESVLLESIAYWSKSHA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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