Pseudomonas simiae 2-36, LS88_RS16310
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain 2-36 scaffold4.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACCCGAACCTGTCAGTGATCCTGGAAACCCTGACCGCCCTGGGCACCCAGCAGATCATGGGGCAGGCCTACCTGCCGGCGATCAAGGACGGCGACAAGC GCATCCTGATGATCGACGGCGAGCCGGTGGATTACTGCCTGGCGCGCATCCCGGCGGCCGGCGAGACCCGCGGCAACCTGGCGGCCGGTGGTCGTGGTGA AGCACGCCCTCTGTCGGACAAGGACCGTTGGATTGCAGCCCAGGTCGGTCCGACCTTGCGTGAAAAGGGCTTGCTGTTTGTCGGCCTGGACGTGATCGGT GAGCACCTGACTGAAATCAACGTCACCAGCCCGACCTGCATCCGCGAGATCGACAATGCGTTTGGCACCAACATCGGCGAAATGCTGATGGCCGCCATTG AGCGCAAGCTGCAAGCCAAGTGATATAGAACAGCCGGACACGCACCAACATTGCGCTATCATGCCCCACCTGTGAAACGCGCGATGTTGGTTTTTTTGTC
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| DNA Sequence for Gene |
>LS88_RS16310
ATGACACTCCCGTCCGAGCTGCCCCCCGAACTCTCCCACAGCGGCGTGCGCCCGGCTGATCGGCTCGGTTTTACCCTGTTTCTGGCAGCGTTGATTCATC TGGCCCTGATCCTCGGCGTGGGTTTCACCATGGTCGAGCCCAAACAGATCAGCAAAACCCTGGAAATCACCCTCGCCACGTTCAAGAGCGAAAAAAAGCC CGAGAAAGCTGATTTCCTCGCCCAAGACAACCAGCAGGGCAGCGGCACCCTCGATAAAAAGGCGGTACCCAAGACCACCGAGGTCGCACCGTTCCAGGAC AACAAGGTGAATAAAGTCACCCCGCCGCCGGTGCCCAAGCCGGAGGTCAAGCAGGCCGCGCCCAAGGCTGCGGTGACCACCGTCGCGCCCAAGCCGCAGA AAGCCCCGACCCAGCGCGAAAAGACCAAGACCGAACCCACGCCCGAGCCCGTAAAGCCGGCACCGACATTCGACAGCTCGACGTTGTCCGACGAGATCTC CAGCCTCGAAGCCGAACTGGCCAATGAACAACAGCTGTACGCCAAGCGCCCGCGCATCTACCGGTTGAACGCGGCCTCGACCATGCGCGACAAAGGCGCC TGGTATAAGGACGAATGGCGCAAGAAGGTCGAGCGCATCGGCAACCTCAACTACCCGGAAGAAGCCCGGCGTCAGCAGATTTACGGCAATTTGCGTCTAT TGGTTTCAATCAACCGCGACGGCACGTTATATGAAGTGCAGGTGCTGGAATCGTCCGGCCAACCGCTGCTGGACCAGGCCGCCCAGCGCATCGTGCGCCT GGCCGCGCCCTTCGCGCCGTTCAGCGGCGATTTGAACGACGTCGACCGCCTGGAAATTATCCGCACGTGGAAGTTCGCCAAGGGCGATCGGTTGTCGAGC AATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGACAATTGCCACCTGCGGCCCATCACCAGCTTGTCAGTTCGCCCCTCCACCGCCACACTATCGAACATGAAAAACGTCAGCCCGACCTACCTCAAGCAT CAATTCCTGATCGCCATGCCCCATATGGCCGACCCGAACTTTGCGCAGACCTTGACCTACATCGTCGAGCACACGGCCAATGGTGCCATGGGGCTGGTGG TCAACCGCCCGCAGGAGCTGAACCTGGCGGACATCCTTGAACAACTGCGCCCGGAAGTCGACACACCGGCCCGTTGCCAGGGTGTGCCGATCTACATCGG CGGGCCAGTGCAGACCGATCGTGGTTTTGTGCTGCACCCGACGGGGCCGAAGTTCCAGGCCACGGTCGATCTGGACGGTGTGTCGCTGTCCACCTCCCAG GACGTGTTATTCGCCATCGCGGACGGTGTAGGCCCCGAGCAGAGTGTGATCACCCTCGGATACGCGGGCTGGGAAGCCGGCCAATTGGAAGCCGAGCTGG
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| Amino Acid Sequence |
>cell envelope biogenesis protein TonB
MTLPSELPPELSHSGVRPADRLGFTLFLAALIHLALILGVGFTMVEPKQISKTLEITLATFKSEKKPEKADFLAQDNQQGSGTLDKKAVPKTTEVAPFQD NKVNKVTPPPVPKPEVKQAAPKAAVTTVAPKPQKAPTQREKTKTEPTPEPVKPAPTFDSSTLSDEISSLEAELANEQQLYAKRPRIYRLNAASTMRDKGA WYKDEWRKKVERIGNLNYPEEARRQQIYGNLRLLVSINRDGTLYEVQVLESSGQPLLDQAAQRIVRLAAPFAPFSGDLNDVDRLEIIRTWKFAKGDRLSS N
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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