Pseudomonas simiae 2-36, LS88_RS12370
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain 2-36 scaffold3.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGCGTCTCGACCGCCTGGACTCCGCGCGCATCGGCAGCTCCCGTGCGATCACCCAACTGATCCTGAACCTGGTGGAAGGTACGCCGATCCGTCTGTTCG ACGGTGGTGAGCAGAAACGTTGCTTCACTGACATCGCCGACGGTATCGAAGCCCTGGCGCGCATCATTGATAACGACAACGACGCGTGCAACGGCCAGAT CATCAACATCGGCAACCCGGAAAACGAAGCCAGCATCCGCCAATTGGGCGAAGAGCTGCTGCGCCAGTTCGAAGCGCACCCGCTGCGTGGCAACTTCCCG CCGTTCGCCGGTTTCCGTGACGTGGAAAGCAAGGCGTTCTACGGCACCGGTTACCAGGACGTGGCACATCGCAAGCCAAGCATCGAAAACGCCAAGCGTC TGCTGAACTGGGAGCCGACCGTAGAGATGAGTGAAACCATCGGCAACACGCTGGATTTCTTCCTGCGTGAAGCGATGCTCGAAATCGCGGACAAAAAGTA
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| DNA Sequence for Gene |
>LS88_RS12370
ATGGATGCAGGTCTTCGCATCGACGTCGACACCTACCGCGGCACCCGTGAAGGTGTGCCACGGTTGCTCGAATCCCTGGACGAAGCCTCGGTAAAAGCGA CGTTTTTCTTCAGTGTCGGGCCGGACAACATGGGGCGCCACCTGTGGCGCCTCATCCGGCCGCAGTTCCTGTGGAAGATGCTGCGTTCCAACGCCGTCGG GCTGTATGGCCTGGATATCCTGCTGGCTGGTACCGCCTGGCCGGGCAAGCCGATCGGTCGCGACCTGGGGCACCTGATGCGCCAAGCCAAGGCGGCCGGG CATGAGGTCGGCCTGCACGCCTGGGATCACCACGGCTGGCAGGCCAACACCGGGCGCTGGAGCGAAGCGCAGTTGGTCGAGCAAATTCGACGCGGCGTGG AGAGCCTGAGCGACATCCTTGGTGAGCGCATTGACTGTTCAGCGGCCGCCGGTTGGCGCGCCGATGAACGCGTGGTGCAAGCCAAGCAAGGGTTCAACTT TCGCTACAACAGCGATTGCCGCGGCACTAGCCTGTTTCGTCCCACCTTGGCCGATGGCAGTGCGGGCACCCCACAGATTCCGGTGGACCTGCCGACCTTC GACGAAGTCGTCGGGCCGGTAGTGGCTGCCAAGGACTTCAATACGTTCATCCTCGACCGCTTTGCCGAGTCGAAGCTCAACGTCTACACGATCCACGCAG AGGTAGAAGGGATTCTGATGGCCAATGAGTTCCGCCAGTTGCTCGCCCAGGCAGGGCAGCGCGGCATCGATTTCAAACCGTTGGGCGAGTTGTTGCCGGC GGACCTGACCACCCTGCCCCAGCAACAGCTGGTGCGCGGCGCCTTGCCCGGTCGCGAGGGTTGGCTTGGAGTGCAGCAGGCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCGCCGTTGGGCCCTGCCCCTGCTCCTGCTGGCGTTTGGCGTGTTTTACCTGCTGCCACTGGCTACCCATGGTCTGTGGATTCCGGATGAAACCCGTTA TGCGCAAATCAGCCAGGAAATGCTGCTGACCGGAAAATGGGCGTCGCCGCACTTCATGGGTATCCGTTACTTCGAGAAACCGGCGGCCGGTTACTGGATG ATCGCGCTGGGCCAGGCGATCTTCGGGCAGAACCTGTTCGGCGTGCGGTTTGCGTCGGCGTTGAGCACCGGATTGAGCATCCTGTTGGTGTACCTGGTGT CGCGTCGGTTGTGGAATGACCCGCAGAAGAGCCTGATCAGCACTGTGCTGTACATGAGTTTTGTCAGCGTGGCGGCCCTGGGCGGTTATGCCAACCTCGA TCCGCAGTTCACGTTCTGGGTGAACCTGACGGGCGTGGCCTTGTGGTTTTGCTTTGACAGCACGACCCGAAACGGGCGACTCGGCGCCTGGGCGCTGTTG
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| Amino Acid Sequence |
>4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase
MDAGLRIDVDTYRGTREGVPRLLESLDEASVKATFFFSVGPDNMGRHLWRLIRPQFLWKMLRSNAVGLYGLDILLAGTAWPGKPIGRDLGHLMRQAKAAG HEVGLHAWDHHGWQANTGRWSEAQLVEQIRRGVESLSDILGERIDCSAAAGWRADERVVQAKQGFNFRYNSDCRGTSLFRPTLADGSAGTPQIPVDLPTF DEVVGPVVAAKDFNTFILDRFAESKLNVYTIHAEVEGILMANEFRQLLAQAGQRGIDFKPLGELLPADLTTLPQQQLVRGALPGREGWLGVQQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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