Pseudomonas simiae 2-36, LS88_RS12240
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain 2-36 scaffold3.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCAAGCCCATGACCGACACGGAGATCAACCCACCCACCCCCATCACATCGGGCACGAACTCCACCGGTTTGCCGGTGATCTGCACCGTCAGTTTCTCGGT CTTGAACGTCGACGTATCCACCGGCACGCTGGGGCCGCTGGCAACATAGGCTTCACGGTGTACCTCCAGCAACCCGACCGTCTTTACCGGCTCAAGCCAC TGCTCGATCTGGCCGAACAACTCATCGAGCTTTTGCGCCCAACGGGCTGACTGCACGTCAAATTGCTGTTTTTTGTGCGCTTCGCTGTCGGCGTAATGAC GAAGCATCTCGCCCAGTTGCTGTACATCGTCCATTGCAGATTTCCTTGGGTGAGCCGGGTTGCGAAGCCCGATCATGGCAGATGCAGCCGCTGAACGTAC GGCTTAAAACTGATCCGCAACAATGAGGTTTTTCTGAGCCTGTTTTGTTTTGCCCCCGCTTCCTACAGTGCCGCCACTTGGAACCGTGGGAGGACTGAGC
|
|
| DNA Sequence for Gene |
>LS88_RS12240
ATGAGCACAGCAACAATCGGGCAGGCCTATAACTACAAAGTCGTCCGTCAATTCGTTATCGCCACTATCGTCTGGGGCGTGGTGGGCATGGCCATGGGCG TGTGGATCGCCTCGCAACTGGTGTGGCCGGAGATGAACCTGGACTTGCCCTGGACCACCTTCGGCCGCTTGCGGCCCTTGCACACCAGCCTGGTGATTTT CGGTTTTGCCGGTAGCGCGCAGTTTGCCGCCAGCTATTACGCGGTGCAGCGCACCTGCCAGGTGCGATTGTTCTCGGACAGGCTCGCAGCGTTCACCTTC TGGGGCTGGCAGTCGGTGATCGTGATCATGCTGATCAGCTTGCCGCTGGGCTACACCACCACCAAGGAATACGCCGAGATCGAGTTCTCTGGAGCGGTGT GGATGGCGGTGGTGTGGGTGGCCTATGCCATCGTGTTCTTTACCACCGTGGTGCGGCGCAAGACCCGGCATATCTACGTGGGTAACTGGTTTTTCGGCGC ATTTATCCTGGTGATCGCCATGTTGCATGTGGTCAACCACTTAGCGATCCCGGTGGATTGGTTCAAGTCGTACCCGGTGTATTCCGGGGCCACCGATGCC ATGGTGCAGTGGTGGTACGGGCATAACGCTGTAGGTTTTTTCTTGACCACCGGTTTTTTGGGGATGATGTATTACTTCGTGCCGAAACAAGTCGGACGTC CGGTGTATTCCTATCGCCTGTCCATCGTGCACTTCTGGGCGTTGATCACCCTGTACATCTGGGCCGGCCCCCATCACCTGCACTACACCGCCTTGCCGGA TTGGGCGCAGTCGTTGGGCATGGCCATGTCACTGATTTTGCTGGCGCCGAGTTGGGGCGGGATGATCAACGGCATGATGACCTTGTCCGGCGCCTGGCAT AAATTGCGCACCGACCCGATCCTGCGCTTCCTGGTGCTGTCCCTGGCGTTCTACGGCATGTCGACGTTCGAGGGGCCGATGATGGCGATCAAGACCGTCA ATGCCCTCTCCCACTACACCGATTGGACCATCGGCCACGTACACGCCGGGGCCCTGGGGTGGGTCGCGATGATTACCTTTGGTTCGCTGTACCACATGAT CCCCAAAGTGTTCGGGCGCGAGCAGATGCACAGTGTGTCCCTGATCAACCTGCACTTCTGGCTCGCGACCATCGGCACCGTGCTGTACATCGCTTCGATG TGGGTCAACGGGATTACCCAGGGCTTAATGTGGCGAGCGGTCAACGATGACGGCACCCTCACCTACTCCTTTGTCGAAGCCTTGCAGGCCAGCCATCCGG GGTTTGTGGTGCGATTTGCCGGTGGTGTGTTCTTCCTCACCGGGATGGTGCTGATGGCCTACAACACGTGGCGTACCGTGCGGGTCGCTGACGTGAACAT GGCGCAGCTTGATGCGCGGATCGCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GATGTGGGGCCTGCTGATGGTGGTGTGCCTGTATGGCGCGGTGGAGTACTGCTTGCGCGGTCAGTCGCAGAAGAGCCTGGATGATGCCAGCTTGATGCCC TTTGCCGATGATCCTGAGGTGGCGCGGCGCGTGGAGCGGGCGACCGGCAAGCCCATCAACGCGGTGGCGCCGGAGGAAGCCAAGCCGGGCTGGGTTAACC TGGACATGTAAAACTGCACCGGTCATTTCGCGACCAACTGCGTATGACTAATTGCCGGCCGATGGGTAAGGTGAGGCGACTTTCCGAGTGAGGAACATCG CATGCGCACCATCGGCCTTATCGGCGGCATGAGCTGGGAGTCCAGCGCCGAGTATTACCGCATCATCAACCAGCGCGTGCGCGACCAGCTCGGCCCGCTG CGCTCGGCGCAACTGTTGATGTACAGCGTGGATTTCGGCCCGGTGGAACAGGCTCAGCACGCCGGCCGCTGGGATGACACTGCACTGATCCTCGAAGATG
|
|
| Amino Acid Sequence |
>cytochrome oxidase subunit I
MSTATIGQAYNYKVVRQFVIATIVWGVVGMAMGVWIASQLVWPEMNLDLPWTTFGRLRPLHTSLVIFGFAGSAQFAASYYAVQRTCQVRLFSDRLAAFTF WGWQSVIVIMLISLPLGYTTTKEYAEIEFSGAVWMAVVWVAYAIVFFTTVVRRKTRHIYVGNWFFGAFILVIAMLHVVNHLAIPVDWFKSYPVYSGATDA MVQWWYGHNAVGFFLTTGFLGMMYYFVPKQVGRPVYSYRLSIVHFWALITLYIWAGPHHLHYTALPDWAQSLGMAMSLILLAPSWGGMINGMMTLSGAWH KLRTDPILRFLVLSLAFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHAGALGWVAMITFGSLYHMIPKVFGREQMHSVSLINLHFWLATIGTVLYIASM WVNGITQGLMWRAVNDDGTLTYSFVEALQASHPGFVVRFAGGVFFLTGMVLMAYNTWRTVRVADVNMAQLDARIA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|