Pseudomonas simiae 2-36, LS88_RS10625
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain 2-36 scaffold3.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGGCTGGCGCAATTTCCCATCGAACTGCCGCCCTTGCGTGAACGCGACGGGGATGTGTTGTTGCTGGCGCGGGAATTTGCGCAACAGGCTTCCATTGCGC TGGCACGTGTACCGGTGTCGTGGTCCAGCGCGGCCCTCGACCAACTGTCGAGCTATGCCTTCCCCGGCAATGTCCGTGAGCTCAAATGCCTGGTGGAGCG CGCAGTACTGCTCTGCGATGACGGAGTGATCCTGCCGGTGCATCTTTCCTTGCCTGCACCACCTGCCAATACCTCTGTCGATGCGACGTTACGCCAACGC TTGGAGCGGGTAGAGCGGGTGTTCCTGATCGATTGCTTGCACAAGAACCGTGGTAATCGCACCCGAACTGCGCGTGAGCTGGGCGTCGCCCGCCGCACGC TGCTCTATCGCCTGGCGCGTCTGAAAATCCCCGTTGGCGATGTCCGTGAGGAGTGCTGAGTGGGGACGTGCTGGCACCTGGTTTTCATGGGAGATACCTG
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| DNA Sequence for Gene |
>LS88_RS10625
ATGTTTTTTCATCCATGGCAAGCCCTGTTGCTTGCGCTGTGTTTGTTGAGTGGCTGTAACGCCAATTATGTCTTTGACGATGCCGACTACCGCCCCTTGG GTGATCCCCAGGCGGTCCGTCGTGGGCAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAGGAGAGTTCTGCCATGCAATTAGTGTTTGAAGTCTGCAGTGTCGTGAACGGTGAACCGTTGGCCCGCAAGACGTTTGAGGGGGGTGGCGGTGTGATC GGCCGTGGGGTGGGGTGTGACTGGATCATCCCCGATGCCCATCGCCTGATCTCCAGTCATCATGCCCTGGTCAGTTATCGAGAAGGTCACTACTTCCTGA CGGATATCAGCAGCAATGGCATCACGGTGTCAGGCAGCATGGAACGCCTGGACAAGGGGCAAGCGCGGCTGATCACAGATGGGGAAGTGTACCAACTGGG CCAATTGGAAATTCGTGCTCGCCTGGTGGCCAATGAACGGCGGCCCTTTGCTCGGAATGACTTGATTCCAGACGACGCATTCCTCGGGCTTGACCCTCTT CATGCACTGGATCGCGAGCAATTGTGCGTCGACTCATCGGCAGAATTGGATGCTCTGGATGCGTCAACGCAGGTGTCTCCCCAATCCCACATGCAAGGGC
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| Amino Acid Sequence |
>type VI secretion protein
MFFHPWQALLLALCLLSGCNANYVFDDADYRPLGDPQAVRRGQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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