Strain | Pseudomonas simiae strain 2-36 scaffold2.1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GGGGAGCGGTGCACCTCTGCCCGAAGCTTTTGATACCCATGTACGTTTACATCTCCTGTCGTCATTACGCCGAACGTCATACCGCATTCAACGCGCAGAC TACACCCCTGATGAGGGGCATTTTTAGTAGAGTTCAAAGCGGATAGAAGCAACCAGCGCTAACGCCCCACCGTTGAATCGCATACATAACAAACGGCAAC ATCGCAGTGAGTTGCCGTGTATTTAATAGTGAACGACCCGATGAGGCTTGCACTGTGTCGACCGGCGTTTAAGTTCGCATTGCGGCCGGGCTGCCCATAA GTGGCGGCAATTCTACCTGTTTGGGACCTTAACTGGAAATGCAGGATGGACGAGGCCTGAGCAGGCCGTCTCACTGGCCTTGCGGGTTGCGGTCATACTC TGTAACCCACCCGTTTTTGACTCCTACCCAACATCACCTAAGTTTGGGAGGCAGCTTAGGAAAGCTGCTTTTCCCTCATCGATGTCATGGAGCGTCACCA
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DNA Sequence for Gene |
>LS88_RS10215
ATGCAAAACACCTACATCTGCGCCCTTATCTTCGCGTTTCTCACCAGCATCTCCGCTACGACCACCGCAGCCCCTTCCATCAAGCCCGAAGCCCCAACCC CTATCGCCACTCAGATGTCCAAGGCCGAGCAATCCGCCAAGGTCAACCTGAACGCCGCCGATGCCGAAACCCTGCGCCGTGATCTCTTCGGCATCGGGGC TGCCAAGGCCAGGGCGATCGTTGCGTATCGCGAAAGCAATGGGCCGTTCACGGCGGTAGATGAGTTGTTGGAAGTGAAGGGGATTGGTAAGGCTTTGCTG GAGAAGAACCGCGAAAGGCTGGTGATCAATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GTCAGGCGAGAAAGCCGGTCACTGACCGGCTTTTTCACGCGTTGAAACCTGGGTTTTCAAACGCGCGCGCACAACCTCCAAGATTCGCATAGCCAATGCC GGATCTTCGACACTCCTGGCGAGCACCAATGCTCCGACCAGCGTCGACATCATCACCAGGCTTTGTTCATCACTCCGTCCATCCGCTAAAGCCGTATCAA TCTGCTTTAGCCGCGCGTCGAGTACTGCGTCCGTCGTTGTACTGTGCTGGCCCCTTAGGCCGAGTTCGGAGGACATGGTAGGCAGTGGGCAGCCTTGGTC CGGAGACGTCATGTGCCATTTCGAGAGGTAACTGTCGATAAAGGCTTCCAGCGGCCGCTCCTGGCTGAACAGCATTTCGCAATGAGCATCCAGCTCTGCC GCAGCCGCCTGCAGCGCCTTCTCCACCAACTCATCCTTGGATTTGAAGTGCGCATAAAACCCACCATGCGTCAGGTTCAGCGCCTTCATCAATGGCTGTA
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Amino Acid Sequence |
>competence protein ComEA
MQNTYICALIFAFLTSISATTTAAPSIKPEAPTPIATQMSKAEQSAKVNLNAADAETLRRDLFGIGAAKARAIVAYRESNGPFTAVDELLEVKGIGKALL EKNRERLVIN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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