Pseudomonas simiae 2-36, LS88_RS08845
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain 2-36 scaffold2.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATTCATGGCGCGCAGTCTATCACTGCCCTCAACGTATCGTTATAACCCGATATACCGATTAAGCCTAGGCTCAGACCAAAATCATATTGGTCTATCGGGA TAGACCGATATAAAGTTCGCCTCATCGCGATATAACGCTGTACAAAACCGAGCATCTGCCATGTCCATCGACCTCGACGAAATAATAAAAGCCCTGGCAC ACCCAGTACGACGAGACATCCTCACCTGGCTGAAAGACCCCAAAGTGCAGTTCCCCGAACAATTGCACAACCACGAATACGGCATCTGCGCCGGGCAGAT CGACCAACGCTGCGGCTTGTCCCAGTCGACCGTGTCAGCCCACCTGGCCACCCTCCAACGCGCCGGGTTGATCAGCAGCCAGAAGGCCGGCCAGTGGCAC TTTTTCAAACGCAACGAGGACACCATCCAGGCGTTCCTCGCGGCGCTCACCACCGAACTCAGCGCGGACGACAACGCCGCGTTGTAACAAGGAAACGATA
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| DNA Sequence for Gene |
>LS88_RS08845
ATGCCCCTCTCGCTACTCATACTGGCCCTCAGTGCCTTCGCCATCGGCACCACCGAGTTCGTCATCATGGGCTTGCTGCCCGATGTGGCAGCGGACCTGG GTGTGTCAATTCCCGGCGCCGGCTGGCTGGTGACCGGCTACGCCCTGGGCGTGGCCATCGGCGCGCCCTTCATGGCGCTGGCCACCGCCAAGCTGCCTCG CAAGGCGGCCCTGGTAGCGTTGATGGGTATCTTCATTATCGGCAACCTGCTCTGCGCCCTGGCCAGTGACTACAACGTGCTGATGTTTGCCCGTGTCGTC ACCGCGCTGTGCCACGGTGCGTTCTTTGGTATTGGTTCGGTGGTCGCCGCCAACCTGGTGCCCGCCAACAAGCGAGCTTCGGCCGTGGCCCTGATGTTCA CCGGCCTGACCCTGGCCAACGTGCTCGGCGTACCGCTGGGTACCGCACTCGGCCAGGAAGCCGGCTGGCGCTCGACCTTCTGGGCAGTGACGGTGATTGG TGTGGTGGCGTTGATCGGCCTGATCCGCTTCCTGCCCGCCAAGCGTGATGAAGAGAAACTCGACATGCGCGCCGAACTGGCCGCCCTCAAGGGCGCCGGC ATCTGGCTGTCGCTGAGCATGACCGCGCTGTTTGCCGCGTCCATGTTCACCCTCTTCACCTACGTAGCGCCGCTGCTCGGCGATGTCACCGGCGTGTCGC CCAAGGGCGTGACCTGGACCCTGCTGCTGATCGGCCTGGGTCTCACCGTGGGCAACATCATCGGCGGCAAATTGGCGGACAAACGCCTGGCGGCCACCTT GATCGGCGTGTTCATCAGCATGGCGGTGGTCTCCACGGCTCTGACCTGGACCAGCGTCGCCGTGATCCCGACCGAAATCACCCTGTTCCTGTGGGCCACC GCGTCGTTCGCCGCCGTGCCGGCGTTGCAGATCAACGTGGTGACCTTCGGCAAGGCCGCACCGAACCTGGTGTCCACCTTGAACATCGGCGCTTTCAACA TCGGCAATGCCCTCGGCGCCTGGGTGGGCGGCAGTGTGATTGCCCACGGTTTCGGCCTGACCCGCGTGCCCTTGGCCGCAGCGGTCCTGGCGATCCTCGC GCTGTTGGTGACCCTGATTACTTTCCGCCAGACCGGCGATGCCGACCTGGCCCCTGCGACCCACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCACTTCAAAGACAAAGGTGCTTTCCCCATGACGACTATTTTCGATCCGATCAAACTGGGCGACCTGGAACTGTCGAACCGCATCATCATGGCGCCGCT GACCCGCTGCCGTGCCGACGCCGGTCGTGTGCCCAACGCGCTGATGGCCGAGTACTACGTGCAACGCGCCTCCGCCGGGCTGATCCTCAGCGAAGCCACG TCCGTGACGCCGTTGGGCGTAGGCTACCCGGACACACCGGGCATCTGGTCCAACGATCAGGTGCGCGGCTGGGCCAACGTCACCAAGGCGGTTCATGGCG CGGGCGGCAAGATCTTCCTGCAACTGTGGCACGTGGGCCGTATTTCCCATGAGTCGTACCTGAACGGCGAAACCCCGGTGGCCCCGAGCGCAATCCAGCC TAAAGGCCACGTCAGCCTGGTGCGCCCATTGGCCGACTACCCGACCCCCCGCGCCTTGGAAACCGCTGAAATCGCCGACATCGTCGACGCCTACCGCACC
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| Amino Acid Sequence |
>transporter-like membrane protein
MPLSLLILALSAFAIGTTEFVIMGLLPDVAADLGVSIPGAGWLVTGYALGVAIGAPFMALATAKLPRKAALVALMGIFIIGNLLCALASDYNVLMFARVV TALCHGAFFGIGSVVAANLVPANKRASAVALMFTGLTLANVLGVPLGTALGQEAGWRSTFWAVTVIGVVALIGLIRFLPAKRDEEKLDMRAELAALKGAG IWLSLSMTALFAASMFTLFTYVAPLLGDVTGVSPKGVTWTLLLIGLGLTVGNIIGGKLADKRLAATLIGVFISMAVVSTALTWTSVAVIPTEITLFLWAT ASFAAVPALQINVVTFGKAAPNLVSTLNIGAFNIGNALGAWVGGSVIAHGFGLTRVPLAAAVLAILALLVTLITFRQTGDADLAPATH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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