Pseudomonas simiae 2-36, LS88_RS07980
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain 2-36 scaffold2.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTGTCGCAGGTTTCGTCGAACGCGCCGTGGCGCAGTCGCACATTCGCCTGGTCACCGGCGGCAAGGCGGTGGAAGGCAATGGCTTCTTCTTTGAACCGAC CGTGCTGGCCGACGCGCAGCAGGACGATGAGATCGTGCGCCGCGAAGTGTTCGGGCCGGTGGTATCGGTGACCCGGTTCACTGATGAAGCGCAGGTGCTC GGTTGGGCCAACGATTCGGACTACGGCCTGGCGTCGTCCGTGTGGACCGCCGATGTAGGACGCGCCCACCGCTTGGCCGCACGCCTGCAATACGGCTGCA CGTGGGTGAATACCCACTTCATGCTCGTCAGCGAAATGCCCCACGGCGGTCAGAAACTGTCCGGGTATGGCAAGGACATGTCCATGTATGGGTTGGAGGA CTACACCAGCGTGCGCCATGTGATGTTCAAGCACTGACGATTTAACCCGGCATCCGTTCTGGATGCCGGGAACCTATAACAATAATTTTCAGGATCTCCC
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| DNA Sequence for Gene |
>LS88_RS07980
ATGGATATCACCCGCCGCGACTTCCTCAACGGCGTCGCCATCACGATTGCCGCTGGCATGACCCCGCTGCAAATCCTGCAAGCCGCCCCCGATGGCCGTT ACTACCCACCTGCCCTCACCGGCCTGCGCGGCAGCCATGCCGGCTCGTTCGAAGTGGCGCACCAAATGGGCTGGGAAAAGAAGGTGTTCGACACCGACAA ACTGCCGATCACCGAGGATTACGACCTGGTGGTGGTCGGTGGTGGCTTGAGTGGTTTGTCGGCGGCGTGGTTCTACCGCGAAAAACACCCCAAGGCGAAG ATCCTGATCCTGGAAAACCACGACGACTTCGGCGGCCACGCCAAGCGCAACGAATTCCAGGCCGGTGGCCGCATGATCATCGGCTACGGCGGGAGCGAGG CTTTCCAGTCGCCCAACCACCTGTACAGCAAGGAAGTGAACGGGCTGTTGAAAACGCTCGGGGTGAATATAAAGCGCTTTGAAACCGCCTTCGATCGCCA GTTCTACCCAGACCTGGGACTGTCGCGCGGGGTGTTCTTCGATAAGGAAAACTTCGGCGAAGACAAACTGGTGACCGGCGACCCGACCCCGATGGTGGCC GACGATGTTGCACCAGGCCAGCTGAATGCCCGCGCCATCCGCGATTTCATCAATGACTTCCCATTGCCAGCGGCAGACCGCCAGGCCCTGATCGAGCTGC ACATGGCGCCCAAGGATTACCTGCCGGGCAAGACTGCCGAAGAAAAGGCCGACTACTTGGCAGCAACCAGCTACCGCGATTTTCTGCTCAAGAACGTAGG ATTATCGGAAGGCGCGGTGAAGTATTTCCAGAGCCGCACCAATGACTTCATGGCGTTGAGCATTGATGCCGTCGCTTCGGCTGACGCCTACAGCGTGGGT TTCCCAGGCTTTGCCGGGATGAACCTGGCGCCCATCAGCGAAGAAGCGGCAGCGGAAATGGAAGAGCCCTACATCTACCACTTCCCCGATGGAAATGCCT CGGTGGCGCGCTTGCTGGTGCGCAGCCTGATCCCGGGCGTGGCGCCAGGGCATACCATGGACGATATCGTGCTGGCGACGTTCGACTACGCCAAGCTCGA CCAGCCCAAGGCAGCCGTGCGATTGCGCTTGAACAGCACGGCGGTCAGCGTGCGTAACGTCGACAACGGCGTGCATATCGGCTACAGCCGTGGCGGACAA CTCGCACAGGTGCGCGGCAAACGCTGCATCCTGGCCTGCTACAACATGATGATCCCGTACCTGTTGAAGGATCTGCCGGCGCCGCAGGCCCATGCCCTGA GCCAGAACGTAAAATACCCGCTGGTGTACACCAAGGTGGTGATCCGTAATTGGCAGTCGTTCCAGACACTGGGCGTGCATGAGATCTACGCGGCGACCCA GCCTTACAGCCGCATCAAGTTGGACTACCCGGTGAGCATGGGAGGCTACGACCACCCGCGCGACCCGACACAGCCGATCGGCTTGCACATGGTCTACGTG CCCACCAGCCCCAACAGCGGCATGAACGCCCGCGACCAGGCCCGTGCCGGGCGGGGCAAACTGTATGGGCAGACGTTCGAGCAGTTGGAAGCGCAGTTGC GTGATCAGTTGCAACGTATGCTCGGGCCGGGTGGGTTCAACCATGAGACCGACATCCTGGCGATCACTGTCAACCGCTGGTCACACGGTTATGCGACCTT CTCCAACAGCTTGTTCGATGATGCCGATGAAAGCGAAGCGTTGATGAAGCTGGCGAAAAAGCCGGTGGGGCATGTGAGTATCGCTAACTCGGATGCGGCG TGGAGTGCGTATGCCCATGCGGCGATTGATGAGGCGTACAGGGCAGCGGGCGAAGTGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACGTGACCTGACGCCTGAACCTAATGGGGGAGCGGGCTTGCCTGCGATGCGGTCGACTCGGCCTCCAGTCTGACCGAGCTGATGCCATCGCAGGCAAGCC CGCTCCTACATGGGGTCGTCTTCTTTCCTGAGGAGTGTGTTCGCTCGCCCCCCCTGCAACACCTTGTTTCACTTGCAACGCCATCACCCCGCCATCAATC AATTTTCCTACGTCATCGAACCGCTTAAGCTATCCAGCGTCTGTTTAATGTCCGTTGCGTTTGGTCGAAGGCATGTCCGAACCGTAATTTCTGATCCAGC ACGTGCCAGGAACGGCGCGGGATTTGCTCACGACAGGTTGTCTCTATGCACCGCAGGAATTTGCTCAAAGCGTCCATGGCCATTGCGGCTTACACCGGTT TGTCGGCCAGCGGCCTGCTCGCCGCCCAAGCCTGGGCGGGGAACCGTGCTGCCGATGGCAAGGCCGTGGCGTTCGACTTCGAATCGCTCAAGGCCCAGGC
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| Amino Acid Sequence |
>spermidine dehydrogenase
MDITRRDFLNGVAITIAAGMTPLQILQAAPDGRYYPPALTGLRGSHAGSFEVAHQMGWEKKVFDTDKLPITEDYDLVVVGGGLSGLSAAWFYREKHPKAK ILILENHDDFGGHAKRNEFQAGGRMIIGYGGSEAFQSPNHLYSKEVNGLLKTLGVNIKRFETAFDRQFYPDLGLSRGVFFDKENFGEDKLVTGDPTPMVA DDVAPGQLNARAIRDFINDFPLPAADRQALIELHMAPKDYLPGKTAEEKADYLAATSYRDFLLKNVGLSEGAVKYFQSRTNDFMALSIDAVASADAYSVG FPGFAGMNLAPISEEAAAEMEEPYIYHFPDGNASVARLLVRSLIPGVAPGHTMDDIVLATFDYAKLDQPKAAVRLRLNSTAVSVRNVDNGVHIGYSRGGQ LAQVRGKRCILACYNMMIPYLLKDLPAPQAHALSQNVKYPLVYTKVVIRNWQSFQTLGVHEIYAATQPYSRIKLDYPVSMGGYDHPRDPTQPIGLHMVYV PTSPNSGMNARDQARAGRGKLYGQTFEQLEAQLRDQLQRMLGPGGFNHETDILAITVNRWSHGYATFSNSLFDDADESEALMKLAKKPVGHVSIANSDAA WSAYAHAAIDEAYRAAGEVA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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