Pseudomonas simiae 2-36, LS88_RS06905
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain 2-36 scaffold2.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGCCGCCGACCAACCGCGCGCCGAGCTGTTGCTGGGCAAGCTCTACTACGAAGGCAAGTGGGTGCCCGCCGACGCCAAGGCCGCCGAAGCACACTTCG AAAAAGCCGTGGGCAAGGAAGTGGCCGCCGATTACTACCTCGGCCAGATCTATCGCCGTGGCTACCTGGGCAAGGTCTACCCGCAAAAAGCCCTGGACCA CTTACTGACCGCTGCGCGCAATGGCCAGAACAGCGCCGATTTCGCGATTGCCCAATTGTTTTCCCAAGGCAAGGGCACCAAGCCCGACCCATTGAATGCC TATGTCTTCAGCCAGTTGGCTAAAGCCCAAGACACGCCAGAGGCCAATGACTTGGCCACGCAGCTGGAAACCCCACTGACTCCGGAGCAACGCGCCCAAG GCCAACGCCTGGTGCAACAGGAACTGGCCGCTCGCGGCACCCTGGCTCAGAGCACGCTGCAACTGCACGCCCTGGAAGAAGAAGACGGCGAGGAATCCCT
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| DNA Sequence for Gene |
>LS88_RS06905
ATGAAGCTCAACCCATTCGTCAAGGCCGGCATCGGCCTGACCTTCGCCCTGCTGTGGTCGTGCCCTACCCTGGCCGCGCTGACCGAAGCCAAAAACTTCG GCCTGGAAGTCAAAGCCACCGCCCAGTCCGAAGATGACCGCGACCTCGGCACGCAGAAAGGCGGCGACGTCAACGGTATCGGCCTCGACCTGCGCCCGTG GATCTACGGTGAAAGCGGCGCGTGGAGCGCCTATGCCATGGGCCAGGCGGTGGTATCGAGCGACATCATCGAGACCGACACGCTGCAGCAGTCGGCGGAT GACGAAAACCAGCAGACCACCAACAACGACCGCAAAACTAAGAAAAACTACTTGGCCATGCGTGAGTTCTGGGTCGGCTACAGCGGCTTCACGCCTTACC CTGGCGAGATCCTCAAGTTGGGCCGCCAACGCCTGCGCAATGACGACGGCCAATGGCGCGACACCAACATCGAAGCGCTGAACTGGACCTTCGACACCAC CTTGCTCAAGGCCAACGTCGGCGTCGCTGAACGCTTCAGCGAATACCGCACCGACCTCAAGGAACTGTCGCCCAAGGATAAGGACCGTCAGCACCTCTAC GCCGACGCCGCCTACCAGTGGACGCCAGGCCAGTGGATCGGCCTGCGCGCTCACCACACCCATGACGACGGCAAGCTGGACTACCCGGAACCGGGCGTCG CCACTGACTCGCTGGACAAGCGCGAGAACGGCGACCTGACCTGGCTCGGCATCGAAGCCAACAGCGACGCCTACAACTGGCGCAACACCAACACCGTCAA CTATTGGGCGAGCATCACCGGTATGCAGGGCGACCGCGACACGGTCAACGCCTTGAACGCCGACGGCACCCGTCCGACCACGGCCAAGCGCAGCGATGAC GTGAATGGCTGGGCCACCGACCTGGGTATCCGCCTGCGCCTGGACCCACAGTGGCAAGTCGGTGCGGCCTACTCCCGCGCCAGCGCCGAATACGAGCAGA ACGGCCTGCAAAGCAACCGTTCGAACTGGACCGGCACCCAGTCCCGCGTGCACCGCTTCGGCGAAGCCTTCCGTGGCGAGATGAACAACATGCAGTCCAT GAGCTTGTTCGGCTCCTGGCAGCTGCGCGAGGACTACGACGCCAGCCTGGTGTACCACAAGTTCTGGCGCGTCGACGGCAACAAGCCGGTGGGCAGCAAC GGCATCGATGCCGTACAGAACAACACCGATGACGTGACCGGCGCGATCCTGTCCAGCACTTCCCTGCCGCTTGAAGACGGCAAGAAAGACCTGGGCCAGG AGATGGACCTGGTGGTCACCAAGTACTTCAAGACCGGCCTGTTGCCGGCTGCGCTCAGCCAGTCGATCGACGAGCCATCGGCCCTGGTGCGTTTCCGTGC AGGTGTGTTCAAGCCGGGCGACGCCTATGGCAGCCAGGTTGACTCGTACATGCATCGCGCCTTTGTCGACGTGATCTGGAAGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGGGAGCCTGCGCAATGAACCCTCAAGCCCTCAAAGGCTCGGCCATGTTGGCGGCAGCGATGCTGCTGGCCAGCGCTGCTGCCATGGCCGATGTCGCGCC GCAGGCTAAAGCGCCGACCATCGCCAAAGAGCTGCAACAGGCCAAGACCTACACCATCTCCAGCCCGCCGACCGCGCCGCTGGAAATGGCCAAGCCGGCC CTGCCGGACCTGTCGGGCTATACCGACGCGGCGATGGAAAAAAAGATCGTGCGCGCCAAGCCAGGCAAGATCAGCATCCGCCGCATGATGCAGGAAGATG CCCTCAAGGACTTCATCGGCGGTGACAACAAGATGGCCGAATGGGTGGTGCGCCAGCACGGCATTCCCCAGGCGATCTTTGTCGACGACGGCTACATGAA CCTCAAGGACTTGCTGGGCAAGGTGCCCAAACAGTACCTGAGCGAGACATCGCCGGGTGTATTCCTGGCCAAGTTGCCAATCGTGGTCGGTCGCAAGGGC
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| Amino Acid Sequence |
>alginate biosynthesis protein AlgE
MKLNPFVKAGIGLTFALLWSCPTLAALTEAKNFGLEVKATAQSEDDRDLGTQKGGDVNGIGLDLRPWIYGESGAWSAYAMGQAVVSSDIIETDTLQQSAD DENQQTTNNDRKTKKNYLAMREFWVGYSGFTPYPGEILKLGRQRLRNDDGQWRDTNIEALNWTFDTTLLKANVGVAERFSEYRTDLKELSPKDKDRQHLY ADAAYQWTPGQWIGLRAHHTHDDGKLDYPEPGVATDSLDKRENGDLTWLGIEANSDAYNWRNTNTVNYWASITGMQGDRDTVNALNADGTRPTTAKRSDD VNGWATDLGIRLRLDPQWQVGAAYSRASAEYEQNGLQSNRSNWTGTQSRVHRFGEAFRGEMNNMQSMSLFGSWQLREDYDASLVYHKFWRVDGNKPVGSN GIDAVQNNTDDVTGAILSSTSLPLEDGKKDLGQEMDLVVTKYFKTGLLPAALSQSIDEPSALVRFRAGVFKPGDAYGSQVDSYMHRAFVDVIWKF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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