Pseudomonas simiae 2-36, LS88_RS03400
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain 2-36 scaffold1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCTCGACCCGACACACGCCAACTGCCTGGCGCCAGGCAAAAAAACCTTCCACACCATCATCCCCGGCTTCCTCACCCAAGACGGCCAGGCCCTCGGCCC GTTCGGCGTGATGGGCGGCTACATGCAGCCCCAGGGCCACGTGCAGATGGTGATGAACCTGGTGGATTTCGGCCTCAACCCGCAAGCGGCATTGGACGCG CCGCGCTGGCAATGGCTGGGCGACATGAAGGTCGGTATCGAACAGGGTGCCTCCCGCGACTTGGCCAATGCCTTGGCGCGGCGCGGGCATCAGGTGCAGA TGGCCAGCGACCTCACCGACTACGGGCGTGGGCAGATCATTCTGCGGGACCCGGTCAGTGGTGTATTGTGCGGCGGAACGGAGCCGAGGGCGGATTCAAC GATCGCAGTGTGGTAAGCGAAAAAATTGGCTGAAGCCTGTCCCCTTTTTTCATCTCGCCTGTCATTCCAGGCAAGTGAACAATATTGAGAGCTTCCGCCA
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| DNA Sequence for Gene |
>LS88_RS03400
ATGCCTGTAGTCCGCCCCTTGCTGAAACTCAGCCTGCTGCTGAGCCTCAGCGCCAGCCCGTTCTTCGCTGCTGTCAGCTACGCCGAAGACACCGCCACTC GCCGCAGCTATCAGGTGCCCGCCGGCAGCCTGAGTGCGGCGCTCACCCGCTTTGCCGGGTTGGCGGGCGTCAATCTGTCGGTGGACCCGGCGTTGGTCAG TGGGCGCAGCAGCAGCGGTTTGTCCGGCGAGTATGCGGTCGAGGAGGGCTTTGCCCGCTTGCTGCAAGGCTCTGGCCTGCAACTGCAGCCGATGGGTGCA CAGGCCTATATGCTGGTGCCGGCGCCGGAGGGCAGCAGCCTGGAATTGGCCCCGACGTCGATCCTCGGCACCACCGGCCTGTATGACGGCGACACCTACG CCGGTGGCCAAGTGGCGCGCCGCACGGCCCAGGGCCTGCTCGGCACGCGGGACTTCATGGAAACCCCGTTCAGCATCACCACCTACACCGCTGACACGGT GAAGAACCAACAGGCCCGCACCCTGGGCGACCTGATCGCCGCCGACCCGTCGGTACGCGCGACCAACCCGGCCGGTGGGCGCTACGAGCAATTCACCATT CGCGGCTTCAGCCTGTTCAACAGCGACGTGGCGTACAACGGCTTATACGGCGTGCTGCCGACTTACACCATCGACATGGAAATGGCCGACCGTGTCGACA TCCTCAAGGGGCCGAGCCAGTTGATCAACGGCATTTCGCCGCGTGGCAGCGTGGGCGGCGGGATCAACGTGGTGCCCAAGCGCGCCACCGACAAGGACAT CAACTCGTTTACCGGCAACTGGGCTTCCGACAGCCAGGCCGGCGGCGCAGTGGACATCGGTCGACGCTTTGGCGAAGACAACCAGTTCGGCATTCGCTTC AACGGCGTGAAGCAGTCCGGCGATACCGAGTGGGATCACCAGAGCGTCGACCGCGAAATGGCCGTGCTGGGCCTGGATTTTCGTGGCGAACGCTTGCGCC TTTCCACTGACATCGGCCACACCGAGCGCGACACCGATGCGCCGCAAGAGCGCGTACAGGTGGCGGCCGCAGCGCCGGTGCCCAGCGCCAATGACGTGCG CCGCAACTATGCGCAATCCTGGAGCAAGGCCCGCACCAACGACACCTTCGGCACGGTCAATGCCGAGTATGACCTCAGCGACAACGTGATGCTCTACGGC GGCATGGGGGCGCGCAAAAGCAACCACGATTTCCTGCGCCACGCGGTGTCCGTATCCAACGCAGCCGGTGACTTCAGCGTGCAGCCACGGGATTTCACCC GCGATGAAAACGTGCGCACCTACACCGCCGGCGTGCGCAACTGGTTCCAGACCGGGCCGGTGAGCCATGAGGTCAACCTGGCCGCCAGCTACTTCGACAT GGACTTCACCAACGGAGGCGCGCGTTATACGTCGCCGTCGAGCAATCTCTACAACCCGGTGCAAACCCCCACGCCTTCGCGGCCGACGCGGTTTGATCCC AAGGTCTACACCGAAAACAAATTCAGCGGCGTGGCCTTGTCCGACACCCTGGGCTTCTTCGATGATCGCCTGTTGCTCACCCTCGGTGCGCGCTGGCAGC GCGTGAAGGTCGATGACTGGAGCGACGGCATCAAAGGTGATACCGCCTACGACGAAGAAAAGGTCTCGCCATCCGGCGGCATCCTGTTCAAGGCCACCGA CAGGTTGTCGCTGTACGCCAACTACATGGAAGGCCTGAGCCAGGGCAAGATCGCGCCGTCCACCTCGATCAACGAAGACCAGATCTTCCCGCCGTTCATC AGCCGCCAGGTCGAAGTGGGCGCCAAGTACGACGCCGGGGCGTTTGCCGTGACCGCTGCGGTGTTCCGTATCAAGCAGCCGGCCTATGAAACCAATGCGA CCACGCGGCTGTTTGGTCCCAATGGCAAACGCGAGAACTCAGGTGTGGAACTGAGTGTGTTCGGCGAACCGCTCAAGGGCTTCCGCCTGCTCGGTGGTGT GATGTACATCGACAGTGAGCTGAAGGACACCACCAACGGTACCTGGGACGGCAACCGTGCCCCGGCCACGCCCAAGTACAACGTCAACCTGGGTGCCGAA TGGGATGTGCCGGGCCTCGAAGGCCTGACGCTGACCAGCCGTGGCATTTACTCCAGCTCGCAGTACCTGGACCAGTCCAACGTCAAGGAAATCGACGCCT GGAACCGCCTCGACGTAGGGGCGCGCTACGCGTTCAAGGTGGACGACAAACACATCACCTTGCGGGCGAATGTGGAGAACGTCGCCGATAAGCGCTATTG GAGTTCGGCCGGGGCTTCGGATGACAGTGAGCCGGGGCTGACCTTGTCGACGCCGCGTACCTATCTGCTGTCCGCCACCGTCGACTTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGGGGGACACCGATCAACCTGTGGGCGCTGGTTTGCTTGCGATAGGGAGGGGCGCCAGTCACAGCGCTATTTGCTGATGTAGCGTCATCGCAGGCAAGCC AGCTCCCACACCTGATTTTGGCGTTAATGAGAATGTTTTTTGATCACGCCGCGTCGATATGGAATAGTACCCGCCGTTTTCCCCGGCCTGTCTAGCGGGG TGTTTTAACGCCGAGGTCCTTGTCATGCGAATGCTGCGCTCCATCCCCACCCTTGCCGCCTGCGTGTTGGCGTTCTCTTCAAGCCTGCTGAGCGCCGCCC CCATCGACCTCAACGACGGCCAGCACGCGGTGCATCTGCCGGATGCGCCCAAGCGCGTGGTGGTGCTGGAATTCTCCTTTCTCGACAGCCTGGCTGCCGT TGACGTCACGCCCGTTGGGGCCGCCGATGATGGTGATGCCAACCGCGTACTGCCCCGTGTGCGCCAGGCCATCGGCCAATGGAAGTCGGTGGGCCTGCGC
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| Amino Acid Sequence |
>TonB-dependent receptor
MPVVRPLLKLSLLLSLSASPFFAAVSYAEDTATRRSYQVPAGSLSAALTRFAGLAGVNLSVDPALVSGRSSSGLSGEYAVEEGFARLLQGSGLQLQPMGA QAYMLVPAPEGSSLELAPTSILGTTGLYDGDTYAGGQVARRTAQGLLGTRDFMETPFSITTYTADTVKNQQARTLGDLIAADPSVRATNPAGGRYEQFTI RGFSLFNSDVAYNGLYGVLPTYTIDMEMADRVDILKGPSQLINGISPRGSVGGGINVVPKRATDKDINSFTGNWASDSQAGGAVDIGRRFGEDNQFGIRF NGVKQSGDTEWDHQSVDREMAVLGLDFRGERLRLSTDIGHTERDTDAPQERVQVAAAAPVPSANDVRRNYAQSWSKARTNDTFGTVNAEYDLSDNVMLYG GMGARKSNHDFLRHAVSVSNAAGDFSVQPRDFTRDENVRTYTAGVRNWFQTGPVSHEVNLAASYFDMDFTNGGARYTSPSSNLYNPVQTPTPSRPTRFDP KVYTENKFSGVALSDTLGFFDDRLLLTLGARWQRVKVDDWSDGIKGDTAYDEEKVSPSGGILFKATDRLSLYANYMEGLSQGKIAPSTSINEDQIFPPFI SRQVEVGAKYDAGAFAVTAAVFRIKQPAYETNATTRLFGPNGKRENSGVELSVFGEPLKGFRLLGGVMYIDSELKDTTNGTWDGNRAPATPKYNVNLGAE WDVPGLEGLTLTSRGIYSSSQYLDQSNVKEIDAWNRLDVGARYAFKVDDKHITLRANVENVADKRYWSSAGASDDSEPGLTLSTPRTYLLSATVDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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