Pseudomonas rhizosphaerae DSM 16299, LT40_RS20120
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas rhizosphaerae strain DSM 16299, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ACTTCCCCTGCCTCGCATTCGATCGAGGGCCTCTACCTCGTTCATCGCCGCTGGTTGACCGAATGGCTGCGCAGCCGCCTGGGCTGTCCGGACAATGCCG CCGACCTCGCCCAGGACACCTTCATGCGTCTGCTGACCGCGCGTGAAGTCACTCCCATCCACGAGCCCATCCGCGAGCCACGCGCCTTTCTCACCACGGT GGCCAAGCGCGTGCTGTTCAACCACTACCGCCGCCAGGACCTGGAACGTGCCTACCTGGAGGCACTGGCGCAGATGCCAGAGCCCCTCGCACCCTGCGAA GAGCACCGGGCGATCATTCTGCAGACGCTGCTGGAACTGGACGCGCTGCTCAATGGCCTGCCAGTCGTGGTCAAGCGCGCCTTCCTGATGGCTCAGGTCG ACGGCCTGGGCTACCGCGAAATCGCCGACGAACTCGGCATTTCCCTGGCCACGGTGAAGCGCTACCTGCACAAGGCAGCCATGCGCTGCTACTTTGCGCT
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| DNA Sequence for Gene |
>LT40_RS20120
GTGAACGAGGCCCGCACGTTTTCCCCGCAGGTGGCCGAACAGGCCGTGCAATGGTGGCTCGAACTTCAGGACGGAGCGCTCGACCCGCGCCAGCAACAGG CCTGGCAGCGCTGGCTGCATGCCGACGGCGAACACCGCCGAGCCTGGGAGCACATGCAAAAGGTCAATCAGCAGTTCGCCGGCCTGCCCGGTCCCCTGGC CCAGGCCACCGTTGGCGCGCCCCACTCGCCCGGCCGCCGACGCGCACTCAAGGCGCTGCTGTTGCTGGGCATGGCTGGCGCAACGACGCTGGCCTTGCGT CAACAGCATTGGCTGCCGCCACTGGTGGCCGATTACCGCAGCCCGCTGGGCCAGCGCCGCCAACTGCAACTGGACGACGGCAGCCGCATCCACCTCAATA CTACCAGCGCCGTAGACGTACGCTTCGATGCGAGCCAGCGCCTGATCCACCTGCTCGAAGGCGAAATCATGCTCACTGCAGGGGTCGACGCGCGGCCCTT GCGCATCAGCACCGACCAGGGGCTGGTTACCACCGAACGCGGACAGGTCAATGTTCGCCAGATGCTCAACAGCACCTGGGTGCAGGCGTTGCACGGCGCC GTCGCGATTCAGCCAGCCGCAGTGCAGGGAACTCCACTGCGCCTGGCTGACGGCCAGCAAGTCGAGTTCGAACGCCAGCGCGTCAATCCGGCGCGGCCAC TGGACGCCAACAGCGGGGCCTGGGTCGACGGCATGCTGATCGCGGCGCACATGCGTCTGGGCGATTTTCTCGCCGAAGTGGGCCGCTATCGCCGTGGCCA GCTGGACTGCGACGCCTCGGTGGCCAACCTGTTGCTCTCGGGCAGTTTCCCACTGGGCAATACCGAGAGCATCCTCGATTCACTGGAGGCCGCACTGCCG GTCAAGGTCCGGCGTTTCACTCGCTATTGGGTCACGGTGCAGGCCCGCGTCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGGCCCAAGGGCCGCCGAAATCTTTTTGCACCTTCGTTGAGCCGTTTTGCCTTGCTCGCGTGACAGACAGGGTAACTCTCCCTATATCCTGCCTGGAAA CGCCGAATGCCCAACCTGCCTACTCCACTCGCCCGCACCCTGCGCTGCCTGTTGCTCGGCACTACCGTGAGCGTGGCTCAACTGCCGCAGGCCGTGGCCG CCGAAAGCGCCACTCGCGAGTACCACATCGCGCCCGCCTCGGTGGAAAGTGCGGTCAACCAGTTCGGCCGCGAGGCAGGTGTCCTGATTTCATTCGGATC GACCACCGTGGCAGACCAGCCTAGCCCTGGCTTGCAAGGCTCGTACACCGTCGAACAGGCATTGGCAGTGTTGCTTGAAGGCACGGGTTTGCAGGCGCGT TCCCTGGGCGATGGTGCCTACAGCCTGGAACAGGCCTCGCTGGCGCAGCCCGCCAGCTCCGATCCCAGTACCGGCGCCACTGTCGAACTGGGCGCTTCGA
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| Amino Acid Sequence |
>membrane protein
MNEARTFSPQVAEQAVQWWLELQDGALDPRQQQAWQRWLHADGEHRRAWEHMQKVNQQFAGLPGPLAQATVGAPHSPGRRRALKALLLLGMAGATTLALR QQHWLPPLVADYRSPLGQRRQLQLDDGSRIHLNTTSAVDVRFDASQRLIHLLEGEIMLTAGVDARPLRISTDQGLVTTERGQVNVRQMLNSTWVQALHGA VAIQPAAVQGTPLRLADGQQVEFERQRVNPARPLDANSGAWVDGMLIAAHMRLGDFLAEVGRYRRGQLDCDASVANLLLSGSFPLGNTESILDSLEAALP VKVRRFTRYWVTVQARV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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