Pseudomonas rhizosphaerae DSM 16299, LT40_RS18740
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas rhizosphaerae strain DSM 16299, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCCATGTTTCGGTGATGGCCAGGGTTTCCAGGTTCTGTTCGATACGGTCGGCGATCTTCAGCAGGACCAGCGAGCGAGCCTGTACCGACGTAGTGCCCCA GGCATCGGCGGCGGCATGGGCGGCGTCCAGCGCCTTGTCGATGTCGCGGGCGTTGGAGCGGGGGAATTCGGCGATGGGCTTGCCGTTCACCGGCGAGGTG GTGGTGAAGTAGTTGCCGTCCACCGGCGCGACGAACTCACCGCCGATATAGTTGCCGTACTTGGCCTTGAATTCGACCTTGGCGCCTTCGGTGCCCGGGT GTGCGTAACGCATGGGGAGTCTCCTGCTGTTGTGATTCTGTGGAGGACGCGCGATAGCGCCCCATAAGCGTAGAACAAAGGCGAGCGCGGTGCTTTGAAA CCGTTGTGCAGTCATGGACCGCAAGCGGGTGATCGCCAATCAAAGGATGAGATTTTTCCTACCCTACGCTACCCTGCCTCGACGTTTTAAGAGGCCAACC
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| DNA Sequence for Gene |
>LT40_RS18740
ATGCACATTCACATTCTCGGTATCTGCGGCACCTTCATGGGCTCTCTGGCGGTGCTCGCCAAGGAACTGGGCCACCGTGTCACGGGCTCGGACGCCAATG TCTATCCGCCCATGAGCACCCAGTTGCAGGCTCAGGGCATCGAACTGACCCAGGGCTACGACGCCGCCCAATTGGAGCCTGCGCCCGATTTGGTGGTGAT CGGCAATGCCCTGTCGCGCGGCAATCCGGCGGTCGAATACGTGCTGAACAAGGGCCTGCCCTATGTGTCCGGTCCGCAGTGGCTGGCCGACCATGTGCTG CAGGGGCGCTGGGTGCTAGCCGTGGCCGGTACCCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCATGCCGGCATGGCGCCGGGCT TCCTGATCGGCGGTGTGCCGCAGAATTTCGCGGTGTCCGCCCGCCTGGGGCAGACGCCGTTCTTCGTGGTCGAGGCAGACGAATACGACAGCGCGTTTTT CGACAAGCGCTCCAAGTTCGTCCACTACCGTCCGCGGACCACGATCCTCAACAACCTTGAGTTCGATCACGCCGATATTTTCCCGGACCTGGCCGCTATC GAGCGCCAGTTCCATCACCTCATCCGCACGGTGCCCAGCGAGGGCCTGGTGATCCACCCTACCACCGAGCCGGCCCTGGGCCGTGTGATCGAGATGGGCT GCTGGACACCGGTGCAGACCACGGGCGAGAACGGCCAGTGGCAGGCGAATCTGCTCAGCGCCGATGGCTCGCGCTTCGAGGTGTCGTTCGAAGGTGTGGT GCAGGGCACGGTGGATTGGCCGCTGACCGGCCAGCACAACGTGGCCAATGCCTTGGCAACCTTGGCCGCCGCCCGTCATGTAGGTGTGGTTGCGCCGTTG GGTATCGAGGCGCTGTGCGCGTTCAAGAGCGTCAAGCGGCGCATGGAATGGGTCGCTGAAGTGCAGGGCGTCACCCTCTACGACGACTTCGCGCACCACC CCACGGCCATTGCCACGACGTTGGACGGCCTGCGCAAGCGCATCGGCGACGCAGCGCTGATTGCCGTGATCGAGCCGCGTTCCAACTCCATGAGGCTTGG CGCCCACCGCGACGGCCTGCCCGACAGCGTCCGCGACGCCGATCAGGTGATCTGGTACGCGCCACTGAACCTGGGCTGGGACCTCGCCGCGACGGCGGCG CAGTGCCCGGTCCCGGCGGTCGTGGCCGATTCGCTGGAAGCCATCATTGAGCGGGTCAAGGGCCAGGCTCGGCCCGGCACCCATGTGGTGATCATGAGCA ACGGCGGCTTCGGCGGCCTGCATCTGAAACTGGCAGAGGCCCTCAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGCCCGCAGCGCATCACCCTGGCCATGACCGGCGCCTCGGGCGCGCAGTATGGTTTGCGCCTGCTCGACTGCCTGGTGCGCGAGGACCGCGAGGTGCA TTTCCTCATTTCCAAGGCCGCGCAGCTGGTGCTGGCCACCGAGACCGACGTCACCCTGCCGGCCAAGCCGCAGGCCATGCAGGCCTTTCTCAACGAATAC ACCGGGGCGTCCGCCGGACAGATCCGCGTGTATGGCAAGGAAGACTGGATGTCGCCGGTGGCCTCGGGTTCCGGCGCGCCGAGTGCGATGGTGGTGGTGC CGTGTTCGACCGGCACCTTGTCGGCCATTGCCACCGGCGCCTGCAACAATCTGATCGAGCGCGCTGCGGACGTAACGCTCAAGGAACGCAGGCAGTTGAT CCTGGTGCCGCGCGAAGCACCGTTCTCGACCATCCACCTGGAGAACATGCTCAAGCTGTCGCAGATGGGCGCGGTGATCCTGCCGGCGGCACCGGGCTTC
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| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSLAVLAKELGHRVTGSDANVYPPMSTQLQAQGIELTQGYDAAQLEPAPDLVVIGNALSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVLAVAGTHGKTTTSSMLAWVLEHAGMAPGFLIGGVPQNFAVSARLGQTPFFVVEADEYDSAFFDKRSKFVHYRPRTTILNNLEFDHADIFPDLAAI ERQFHHLIRTVPSEGLVIHPTTEPALGRVIEMGCWTPVQTTGENGQWQANLLSADGSRFEVSFEGVVQGTVDWPLTGQHNVANALATLAAARHVGVVAPL GIEALCAFKSVKRRMEWVAEVQGVTLYDDFAHHPTAIATTLDGLRKRIGDAALIAVIEPRSNSMRLGAHRDGLPDSVRDADQVIWYAPLNLGWDLAATAA QCPVPAVVADSLEAIIERVKGQARPGTHVVIMSNGGFGGLHLKLAEALK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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