Pseudomonas rhizosphaerae DSM 16299, LT40_RS18525
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas rhizosphaerae strain DSM 16299, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GGTGCCACAGATGACACCCATGCACGACCTGGCGCAGATGGGCACCGCCCTGGCCGAAGCCGGACCCGCAGCCCACCAGCAGGCGCCCGATGCACCGGTG GTCCAGGCACTGGACGGGCAGCAGTTGCGCATCCCCGGCTACATCGTGCCGCTGGAAGTGAACGAGGCCGGTCGAACCACCGAGTTTCTCCTGGTGCCCT ACTTCGGCGCCTGCATCCATGTGCCACCGCCGCCGTCCAACCAGATCGTGCACGTGACCAGCGCGGTCGGCGTCAAGGTCGAAGAGCTCTACCAGCCCTA CTGGATCGAGGGGCCCATGCAGGTCAAGGCCAGCAGCAGTGACCTGGCGCAGGCGGGCTACCAGATGGCTGCCGCGAAGATCTATGCCTACGAGCTGCCG GACTGAGCCATTGGCCTTTCATTGAGCCAGATCAAAAAGCCGAGCCGGTGTACTGACTACCATTGGGCGAATTTCCTTCGCACTATCCAATGGAGCCCCC
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| DNA Sequence for Gene |
>LT40_RS18525
ATGAACAAGTCCTTGCTCGGCGCCTCTCTGATTGCCATGGCGCTGGCAGCCCCCCTGGCCCAGGCACACCAGGCTGGCGATCTGATCATCCGCGCCGGTG CCGCCACCACCGCGCCCAATGAAGACAGCGGCCAGCTCAAGCTAGACGGCGTCAAGGTCGCGGGCACCAAGGCCACTCTGGACAGCGACACCCAACTGGG CCTGGCCTTCGCCTACATGCTCACCGACCACGTCGGCATCGAGCTGCTGGCGGCCACGCCGTTCCAGCACACCGTGGGCGTGCGCGGAGTCAGCGCTGCC ACCGGCATCGCCGGGCTTGACGGCAAACTGGCGGACGTCAAACAACTGCCCCCTACCCTGTCCCTGCAGTACTACCCACTGGCACCGACCTCACGCTTCC AACCGTACGCCGGCGTCGGCATCAACTACACCCTGTTCTACGACGAAGACCTAAGTGGTGCGCGCAAGCAACAGGGCTTCAACAATCTCAAGATTCAGGA TTCGGTGGGCATCGCCGGGCAACTGGGGTTCGACTACATGCTCAGCGAGCACATGATGGTCAACGCATCGGTCTGGTACGTCGACATCGACACCAAGGCC AGCGTCGACGGCCCTACCGCGCTGGGCGTGGGCCGTACCAAGGTCGACCTGGAAGTCGACCCGTGGGTGTACATGGTCGGCGTGGGCTACAAGTTCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACGCGCTTACCGCCGCCCGCCCTTCGCCCATTGCGGGCGTGGGCTGGCACGCAAAAGTGAAAAGCCTATAACCCCAGCAGACGCCGCAGCCCTTCTTCCA GCGGCGTCACCGGCCCCAGTTCGAAACGTTCCAGCAGCCGGGTATTGTCGGCCCGTGAGTGACGGATATCGCCGCCCCGCGCCGGCCCATGGCTCACCGC CGGCAAACCGCCGAGCACCGCGCCCAGCCCCGCCAGCAGCTCATTCAACGAAGTCGCCTGATTCAGCCCCACGTTCACCGGCCCTGCTTGCACAGTCGGC TGCTGCAACCCTTGCATCAGCAAGGTCACCAGATCACCCACATAGAAGAAATCGCGGGTCTGCTCGCCGTCGCCGAACAGACTGATAGGCTGCCCGCGCT GCGCCCGCTCGCTGAAAATACTGATGACGCCCGAATACGGCGAGGAAGGATCCTGCCTCGGCCCGTAGATATTGAAGAAGCGAAACACAACCGGCTCCAG
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| Amino Acid Sequence |
>membrane protein
MNKSLLGASLIAMALAAPLAQAHQAGDLIIRAGAATTAPNEDSGQLKLDGVKVAGTKATLDSDTQLGLAFAYMLTDHVGIELLAATPFQHTVGVRGVSAA TGIAGLDGKLADVKQLPPTLSLQYYPLAPTSRFQPYAGVGINYTLFYDEDLSGARKQQGFNNLKIQDSVGIAGQLGFDYMLSEHMMVNASVWYVDIDTKA SVDGPTALGVGRTKVDLEVDPWVYMVGVGYKF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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