Pseudomonas rhizosphaerae DSM 16299, LT40_RS15675
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 237 | 268 | - |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 486 | 657 | 5.0E-59 |
| PANTHER | PTHR45138 | REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM | - | - | 367 | 658 | 1.1E-72 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 498 | 654 | 2.0E-47 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 496 | 656 | 1.1E-49 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 503 | 656 | 1.33E-50 |
| Coils | Coil | Coil | - | - | 477 | 497 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 170 | 215 | - |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 492 | 658 | 8.9E-52 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 488 | 658 | 1.2E-63 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 501 | 655 | 2.94583E-65 |
| Coils | Coil | Coil | - | - | 438 | 465 | - |
| Coils | Coil | Coil | - | - | 375 | 402 | - |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.