Pseudomonas rhizosphaerae DSM 16299, LT40_RS11425
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas rhizosphaerae strain DSM 16299, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGCAGCAGTACTGCCTGCAACGCACGACCGTAGCACCACCCTTGCGGCACAAGGTTCTGGCACGGTTCATCAGCGGTGGCAGCTACGACGACTGTCTGGG CCTGCAACGCGAAGCCCTGCAACGCCAGGTGAGTGCTTTCATCACCGTGCTGCACGCCCGTCTGCACGAGCGGTTGCAGCTGGCGAGCACGGCAGGGGGA GCCTGCGTGTGGGCGCGGTCACGCGTCCCGGTCGACATGCGCAGCGTTTTCGAAGACCTGCGCAGGCAGCGCCTGTTGATCGCTCCAGGAGGCATCTTCA GCCTGCAGGGCCATTGCCATCAACACCTGCGCCTCAATGGTTGCGGGCATTCGACCGAGCAGTGGGAGCGCTGCGCCACGGCGCTGTCAGCAGCGTTGGA GGCACACGGGGTGTAGGGCACCATCGGTCCATTTCCGATTGCCTTGGCTTTTTTCTGTATGTATAACCAGTGACTTTCACGACTCTGGTTTGGCGACAAC
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| DNA Sequence for Gene |
>LT40_RS11425
GTGGCATTTGCACCGCTTGAAGACCCTTTCTACTACCTGGCCAATTTCCGTCGCGTGCTGGCGTGGCTCGAACAACGCTACCTGGACGTGCTGGATACCG AGGAGCTGGGTTTCATCCAGCGTTTCGAGACGCTGCCGCAGCCGTCCCAGGCGCTGCTGGTGCGCATGATCATGCGCAAGGGTGAAATGTTTCGCGCCAG TCGCCTCGACTACGCAGAGATCGGCTGCCCGCACGAGGCGGCGGGTCCGCTGTTGGCCAGCGGTTACCTGATGGATCAGGCGCCCTTGACGTTGGAGCAG GTGGGCGAGGTGTTGCTCAAGCCGGAAATCGTCACCTGCTTTTCGGCCCACATCACCAAGTCGTCATTGCCCAAGCCGCAGTTGCTGCTGGCCCTCGCCG AACACCAATGGCCGGCGCAGCCCTTCCAGGCATGGTGCCCTACGTTGGCCGACACGCTCTATTGCCTGACCGTGCAGGCGCTCTGCGACCGGCTGCGCTT GCTGTTTTTCGGCAACCTGCATCAGGGCTGGACCGAATTCGTGTTGGCCGACCTGGGCGTGTACCGCTACGAGTCGGTGCAATTGGCGCCCGAGTCCCGC GGGCTGACCCACCGCGACGATGTCGCCGCCGGGCTGGCCCTGCACGCCTGCAGCGAAGCGATGGAGGCCGGCCTGCCTTGTGAAGACATTCATCGCCAAC TGCTCGCCGTGACCACTGAAAAGTCCTGGTTGCAGAGCCGTCGGCAGAAGCTGTTGTTCCGGCTAGGGTACGCCTGCGAGCGTCAGCAGGATCTGCAGCA GGCTCTTGTGGTGTATCGCAGCTGCGAGTTCGCCCAGGCACGGGCGCGGATCATTCGCGTGCTCGAGCTGTGTGGCGAATACGCCCAGGCGCTGGCGTTG GCCGAGCAGGCCAGCCTGGCGCCGCTGAACCCGGCCGAGGCGCAGCAACTGCCACGCATGCTGCCGCGCTTGCGCCGGCACCTGGGTTTGCCGGCCCAAC CCAAGCGCCACGCCGCCAAGGTCGCACGCTTGGACCTGACGCTGGTGCTGTGCGAACAACGCTTGAGTGTCGAGCGCCGCGTGGCGGCCTCGCTGCACAG CGAAGATGCTCCGGTGCATTACGTCGAGAACACCTTGTTCAATGCCTTGTTCGGCCTGCTGTGCTGGAAGGCGATTTTCGCACCGTTGCCCGGGGCGTTT TTTCACCCGTTCCAGAACGGTCCGGCCGACCTGCACCAGCCCGACTTCCGCCAACGCCGCAGTGCGCTGTTCGACGCGTGCCTGGGCGAGCTGGACGACG GCCGCTACAAGCACACCATCCGCCAGACCTGGCAAGAGAAGCGGGGCTTGCAGTCGCCCTTCGTGCATTGGGGCATGCTCGACGAAACCCTGCTGGAGCT GGCCTTGGGCTGCATTCCGGCGCAGCACCTCAAGCACTGCTTCGACCGCGTGCTGGAAGACGTCAAGGCCAACCGTACCGGCATGCCCGACCTCATCCAA TTCTGGCCCGCCGAAGGTCGCTACCTGATGATCGAGGTCAAAGGGCCCGGCGACCGCTTGCAGGACAACCAACTGCGCTGGCTGGAGTTCTGCGCTCGCC ATGGATTGCCGGTGCAGGTCTGCTACGTGGAGTGGGCAGGACAGCCCGCGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTATACCGTGGCCGTCCGGGCCTTATGCGAGTTCACGGCCAAGGTCGGCGACCTGGACCTGCGCTTCACGCCATCGCCGTCGGCCCAGGAAGGCATGCT TGGCCACCGCCGGGTCACCCAGGGCCGCGATGCCGGCTACCAGAGCGAAGTCACCCTCAGCGGTCAGTACCACGAACTGCTGGTGCGCGGCCGTGCCGAC GGCTATGACCCGGTGCTCAACCGCCTGGAAGAGATCAAGACCCATCGCGGCGACCTCGATCTGCAGCCTGACAACCATCGTCAACTGCATTGGGCCCAGG CCAAGGTCTATGCCTGGCTGATGTGCCAGCAATTGCAGCTGACGCGCATGGATGTGGCCCTGGTGTATTTCGATGTCGATTACGACAAGCAGACGGTGTT CAGCCAGCAGTGTCAGGCGCAGGACCTGGAAGCGCATTTCGAACGGCTGTGCTCGCGCTTCCTGAACTGGGCGCGTCAGGAACTGGCTCGCAGCGCCGAG
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| Amino Acid Sequence |
>nuclease
MAFAPLEDPFYYLANFRRVLAWLEQRYLDVLDTEELGFIQRFETLPQPSQALLVRMIMRKGEMFRASRLDYAEIGCPHEAAGPLLASGYLMDQAPLTLEQ VGEVLLKPEIVTCFSAHITKSSLPKPQLLLALAEHQWPAQPFQAWCPTLADTLYCLTVQALCDRLRLLFFGNLHQGWTEFVLADLGVYRYESVQLAPESR GLTHRDDVAAGLALHACSEAMEAGLPCEDIHRQLLAVTTEKSWLQSRRQKLLFRLGYACERQQDLQQALVVYRSCEFAQARARIIRVLELCGEYAQALAL AEQASLAPLNPAEAQQLPRMLPRLRRHLGLPAQPKRHAAKVARLDLTLVLCEQRLSVERRVAASLHSEDAPVHYVENTLFNALFGLLCWKAIFAPLPGAF FHPFQNGPADLHQPDFRQRRSALFDACLGELDDGRYKHTIRQTWQEKRGLQSPFVHWGMLDETLLELALGCIPAQHLKHCFDRVLEDVKANRTGMPDLIQ FWPAEGRYLMIEVKGPGDRLQDNQLRWLEFCARHGLPVQVCYVEWAGQPA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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