Pseudomonas rhizosphaerae DSM 16299, LT40_RS08995

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001604
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001604
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003911 DNA ligase (NAD+) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00532
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00278
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG prh03030 DNA replication 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG prh03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG prh03410 Base excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG prh03420 Nucleotide excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.10.150.20:FF:000007 DNA ligase - - 448 523 3.3E-29
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 325 406 1.25E-27
Gene3D G3DSA:1.10.150.20 - - - 448 522 2.3E-28
Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type 413 452 4.1E-11
SMART SM00292 BRCT_7 IPR001357 BRCT domain 703 780 1.2E-8
SUPERFAMILY SSF52113 BRCT domain IPR036420 BRCT domain superfamily 704 777 6.38E-18
SUPERFAMILY SSF56091 DNA ligase/mRNA capping enzyme, catalytic domain - - 5 322 5.94E-118
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 410 601 3.71E-51
Gene3D G3DSA:1.10.150.20 - - - 616 689 1.0E-6
Gene3D G3DSA:1.10.287.610 Helix hairpin bin - - 2 63 1.3E-27
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 530 549 140.0
Pfam PF03120 NAD-dependent DNA ligase OB-fold domain IPR004150 NAD-dependent DNA ligase, OB-fold 328 404 2.3E-34
Gene3D G3DSA:3.40.50.10190 BRCT domain IPR036420 BRCT domain superfamily 690 778 1.0E-25
FunFam G3DSA:2.40.50.140:FF:000012 DNA ligase - - 323 396 2.0E-34
FunFam G3DSA:1.10.150.20:FF:000006 DNA ligase - - 524 601 3.6E-22
CDD cd17748 BRCT_DNA_ligase_like - - 706 776 1.3116E-26
FunFam G3DSA:1.10.287.610:FF:000002 DNA ligase - - 1 63 9.1E-29
Gene3D G3DSA:1.10.150.20 - - - 523 603 6.3E-24
PANTHER PTHR23389 CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 - - 16 756 6.7E-51
PIRSF PIRSF001604 LigA IPR001679 NAD-dependent DNA ligase 1 621 0.0
SMART SM00532 ligaN3 IPR013840 NAD-dependent DNA ligase, N-terminal 2 466 0.0
Hamap MF_01588 DNA ligase [ligA]. IPR001679 NAD-dependent DNA ligase 1 777 52.294815
Gene3D G3DSA:3.30.470.30 DNA ligase/mRNA capping enzyme - - 64 321 2.2E-100
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 498 517 760.0
NCBIfam TIGR00575 JCVI: DNA ligase (NAD(+)) LigA IPR001679 NAD-dependent DNA ligase 10 607 0.0
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 464 483 3.0
PIRSF PIRSF001604 LigA IPR001679 NAD-dependent DNA ligase 610 780 7.9E-31
Gene3D G3DSA:6.20.10.30 - - - 397 447 4.2E-12
Pfam PF00533 BRCA1 C Terminus (BRCT) domain IPR001357 BRCT domain 703 775 1.5E-12
Pfam PF12826 Helix-hairpin-helix motif IPR041663 DisA/LigA, helix-hairpin-helix motif 528 591 1.1E-18
FunFam G3DSA:3.30.470.30:FF:000001 DNA ligase - - 64 321 3.2E-107
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 323 396 2.7E-32
Pfam PF01653 NAD-dependent DNA ligase adenylation domain IPR013839 NAD-dependent DNA ligase, adenylation 4 323 7.4E-128
CDD cd00114 LIGANc IPR013839 NAD-dependent DNA ligase, adenylation 5 323 0.0
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 610 694 7.04E-10

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.