Pseudomonas rhizosphaerae DSM 16299, LT40_RS08405
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas rhizosphaerae strain DSM 16299, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TTCGTTGGCAAAACGCTCGTCGCTGCCACCATAGGGCGAGCCACAGCCCTCGGTTACCGAGGGCTGTGGCATTTTCAGCCAGTTCCAGTGTGCAACGTAT GCGCAACAAGTGTGTTACGAAATCGCGTCAGGCTTATCCTCGCAACTCTGCGAAAACGCCAGTAAACCGACTTGTCGAGGCTTCTCAAACCCATACCGTG CCGAAGTCCGGCACCACTGGCACGACGATTAACTACCCTTCCTAACCGGCACTGTCGCTATGCCCACGTGCTATTGGTAGCGCTATCTCGCTGATGAACA GGTTCAGTGATCGAATGCTCAGGATGACGAATGAGTTTCAGGTGGGGCGAATGTGAGCTGACGTGAAGAACATGCATACTATCACTGGCGAGCTGCTATG TGACGTGTGTCTCGGCCTATCATGCAGATAATGGCATGATGATATCACACTATGCCGGGCTGCCGCATCTGGAGTCCGTTCGATCATTCAAGGAAGTCCC
|
|
| DNA Sequence for Gene |
>LT40_RS08405
GTGTCGTCGTCTGAATCTGTAAAACGCTGGTGGGTGCTGCTCGCGGTCATGATGGTGTTTCTGCCGGTGGTGCTGGACGTGACCATCCTGCACGTGGCGG TCCCATCGCTGACCCTGGCACTGCTGGCCACCGGTACCGAGGTGTTGTGGATCATCGACATCTACCCCTTGATCATGGCCAGCCTGCTGATTCCCATGGG CACCCTCGCCGACCGCATCGGCCATCGCCAACTGTTGATTGCCGGGCTGTGCCTCTTCAGCCTCGGGTCGGTATTTGCCGCGTTCTCGCCCAGCGTCGCT GCGCTGATCGCCGCGCGGGCATTCATGGCCTTCGGCTCGGCGATGATCATCCCCTGCACCCTGGCCATCATCCGCCAGACTTTCGACGACGAGCGCGAGC GCGCCATGGCCCTGGGCATCTGGGGCGCGACTGGCTCGGCGGGCGCTGCCATCGGCCCGCTGGTAGGCGGTGCCCTGTTGGAGCATTTCTGGTGGGGCGC GGTGTTTCTGGTCAATGTGCCGGTGATGCTGGTAGTGATGCCGCTGGTGCTCAAGCACGTTCCGCGCACCGCCATTACCGGCGACGGCAACTGGACCATC GGCCAGGCCTTGATCCTGATGCTGGGCATCATGGCCACGGTCTATGCCCTCAAGTCGGGATTCAAACCGGGTAGCTCGGCATCCGTGACCACCGCTTCGG CACTCATCGGCCTGAGCATGCTCGGCTGGTTCGGGCACAAGCAGCTGCATGCCGCACAACCGATGCTGGACCTGAGCCTGTTCCGTTCGCCAGCGATCAG CGCGGGTGTGGTCATGGCTTTGGTGGTGATGGGTGCACTGGCCGGGGTCGAATTGATGCTGGCGCAGGAGCTGCAGTTCGTCCTGGGACAAACGCCGCTG CAAGCTGGAATGTTCCTGTTGCCGTTGATGGTCGCCTCGGCCGTCGGCGGCCCCATGGCCGGTTTGCTGCTGCGCGCCATCGGCCTGCGCTGGGTCGGCA GCCTGTCGCTGGCCGCCGCCAGTGCCAGCCTGGCGGGCCTGGCCATGGCCGATCTGCACCACAGCGGCCTGGGCGTGATCGGCCTGCTGGTAGTGCTCGG CGCGTCGCTGAGCATTGGCCTGACAGCTTCCTCGGTGGCGATCATGAGCAGCACCCCGCCGCACAAGGCCGGCTCGGCCGGCGCGCTGGAGGCCACCAGT TATGACCTGGGCTCGGGATTGGGGATCACCGGCTTCGGCATCGTGCTGGGTAGTGGCTACACCCGTTCGATGCAGATGCCCGAAGGGTTGCCGCCCGCCA TCGCGGAGAGTGCCCGGCACTCGATCGGCGAGACCATGAGCGCTGCGAAAGCGCTGGGCGGCCCACAGGCGACCGAACTGGTCGCCGCAGGCCAGGCGGC GTTCAGTACTTCCCACAGCCTGGTATTGATGTCGGCCGCAACCTTGATCGGCGTACTGGCCGTGGTGATCTGGGTTGCGTTGCATCGCCATGGGCACACT CACAGTCAGGCGGTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CTGGATAGAGGCGAGTCGCACGGCACGCCGGTCAAGGCGCACTCACTGTTGACGTGTCGCTTCGTCGCTCCGGCTGAATTTTCTGCGGCCGGCCGAACTC GAATCATCACACCAAAAACATAATTGGTACCATGATGATCTCGCTCCAATCCATGGCCTGCCAGCCTTCGTGCGCCACGCCCAGCCGTGCCGCCCTGCCG ATGTACCAATCGCTACTCGGCGACCCTGAAACCACTGATCCCACCGTGATAAAAGGCTTTCTCGAAGAGCAACTGGAGCAGGCTTCGGCACTGCCCTGCC CGATGCCGACCGAGCCGGCCCAGCTGTTGCAGTGGGTGGCGGACAATGCCGCAGCGGTGGGTCGCCAGTACTCGGAGTATCTGCAGTTACGCCATGCCGG TGCGCCGCGGCGTTTCTTCAGCAGCAAGGCGCATGCGCTGTACTTTCTGCAGCAGGTCGCGCCGAGCAAATTGGTGGATGGCGCGTGGCTGTTTGGAACG
|
|
| Amino Acid Sequence |
>methyl viologen resistance protein SmvA
MSSSESVKRWWVLLAVMMVFLPVVLDVTILHVAVPSLTLALLATGTEVLWIIDIYPLIMASLLIPMGTLADRIGHRQLLIAGLCLFSLGSVFAAFSPSVA ALIAARAFMAFGSAMIIPCTLAIIRQTFDDERERAMALGIWGATGSAGAAIGPLVGGALLEHFWWGAVFLVNVPVMLVVMPLVLKHVPRTAITGDGNWTI GQALILMLGIMATVYALKSGFKPGSSASVTTASALIGLSMLGWFGHKQLHAAQPMLDLSLFRSPAISAGVVMALVVMGALAGVELMLAQELQFVLGQTPL QAGMFLLPLMVASAVGGPMAGLLLRAIGLRWVGSLSLAAASASLAGLAMADLHHSGLGVIGLLVVLGASLSIGLTASSVAIMSSTPPHKAGSAGALEATS YDLGSGLGITGFGIVLGSGYTRSMQMPEGLPPAIAESARHSIGETMSAAKALGGPQATELVAAGQAAFSTSHSLVLMSAATLIGVLAVVIWVALHRHGHT HSQAV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|