Pseudomonas rhizosphaerae DSM 16299, LT40_RS06530
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0006281 | DNA repair |
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006284 | base-excision repair |
Inferred from Sequence Model
Term mapped from: InterPro:SM00478
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0003824 | catalytic activity |
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | prh03410 | Base excision repair | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF55945 | TATA-box binding protein-like | - | - | 8 | 105 | 4.08E-22 |
| Gene3D | G3DSA:3.30.310.20 | - | IPR037046 | DNA-3-methyladenine glycosylase AlkA, N-terminal domain superfamily | 8 | 124 | 3.6E-27 |
| SUPERFAMILY | SSF48150 | DNA-glycosylase | IPR011257 | DNA glycosylase | 115 | 300 | 1.29E-34 |
| PANTHER | PTHR43003 | DNA-3-METHYLADENINE GLYCOSYLASE | - | - | 77 | 300 | 6.6E-33 |
| Pfam | PF06029 | AlkA N-terminal domain | IPR010316 | DNA-3-methyladenine glycosylase AlkA, N-terminal | 8 | 124 | 4.7E-29 |
| Pfam | PF00730 | HhH-GPD superfamily base excision DNA repair protein | IPR003265 | HhH-GPD domain | 130 | 259 | 3.4E-6 |
| Gene3D | G3DSA:1.10.340.30 | Hypothetical protein; domain 2 | - | - | 125 | 248 | 1.5E-28 |
| SMART | SM01009 | AlkA_N_2 | IPR010316 | DNA-3-methyladenine glycosylase AlkA, N-terminal | 7 | 124 | 1.3E-37 |
| Gene3D | G3DSA:1.10.1670.10 | - | IPR023170 | Helix-hairpin-helix, base-excision DNA repair, C-terminal | 249 | 302 | 1.5E-7 |
| SMART | SM00478 | endo3end | IPR003265 | HhH-GPD domain | 134 | 299 | 1.8E-6 |
| CDD | cd00056 | ENDO3c | IPR003265 | HhH-GPD domain | 126 | 295 | 2.08056E-18 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.