Pseudomonas rhizosphaerae DSM 16299, LT40_RS06135
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas rhizosphaerae strain DSM 16299, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ATGTCCGAAAAACAGGTGATGCCGCCTTGCAGTTGTTCGGCGATCGCCAGATCGGTGCCGTCGCGCACGAACGCCTCGCTGACCCAGCGGGCTTCGGCGG GCCAGATGTGTTGTTCGAGCCAGGTCATCAGCGGCAGATCGTCGGCCAGGCCGCGGAACAGGGTCATCGCTGCGTGCCCGTGGGCATTGATCAACCCCGG TGCGAGCAACTGGCCCGGTAGTTCGCGGATTTCCCTCGCCTGCAAGCGGGCGGCAGCACTGCGCGGGCCAATGAAGGCGATCTGGCCGTCCCGGATACCC AGGGCATGGTCCTGAAGCACGACACCCGCGGGCTCGACCGGTACCAGCCAGGTGGGCAGCAGGAGCAGGTCCAGGGCGGTATCGACGTCGGGCATGGCAA GTTCCGGGGCTTCGGCAGGTGATGGCGAAGTATACCCGAGCGTCTTGGGCGGGGGCTCGCTATAATCGGCCGCTTTTGGCGTCTGAGTACGGAGTGGGGC
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| DNA Sequence for Gene |
>LT40_RS06135
ATGCGTGATCGATTGTTGGCGGCGGAACGGGTCAAAGCCGTTGATTGGCGAGGTGACGCGTTGCACCTGATCGACCAGCGCGCGCTTCCTGCGCAGGAAG TCTGGCAGGCTTTCGTCGATGCCCCCGGTGTGGCCGGTGCGATTCGTTCCGGGCTCGTGCTCGGTGCCTCGGCCGTTGCCATCTGCGCAGCCTATGCAGT GGTGCTCGCAGCCCGCCTGCATCGCGCGACCGGTGCCGACTGGCGCCACGGCCTCGACGAAGACCTGCGCATGCTGGCCGCACTCCGCCCGGCCACGGCG AACCTGTCCTGGGCGCTGGAACGCATGCGCGAACGCCTGGGCCGTGTGCGAGCCGACGAAGACCCACTGCCCGCGCTCGAAGCCGAGGCCCTGGCCATTC ACCAGAGCGATCGCGAAGCCAATCTGACCATGGCCCAATTGGGTGTGGAATTGATCCGTCGGCACCAGGGCAACCTGCAGACCGTGCTGACCCACGCCAA TGCCGGCGCCCTGGCCAGCGGCGGCTTCGGTACCGCGCTCGGAGTGGTGCGTGGGGCGTTCCACGAAGGCATGCTCGAACGCGTCTATGTCGGCGAAACC CGCCCGGCCCTGCAGGGTTCGCGCCTGGCCGCCTGGGAGCTGTCCCGCGAGGGCGTGCCGTTGACCGTGACGGCCGACTCGGCAGCGGCGCACCTGATGA AAAGCAAGGGCATCACCTGGGTGATCGTCGGCGCCGAGCGGATTGCCGCCAACGGCGATATCGCAGCGCCCATCGGCACTTATCAGCTGGCAGTCGGTGC GATGCACCACGGGGTTCGCTTCATGGTGGTGGCCACCAGCGCGGCGATCGACATGGCCCTGGAAAGCGGCGACGACATTCCCCTGCTCGAGCGCGATGCC CGTCAATTGCTGGACGTGGCCGGGACGCGCATCGGCGCCGATGTCGAGGCGTTCAACCCAATCCATGACGTGACACCGGCCGACCTCATCGACGTGATCG TCACCGAAAAAGGTATCGTCGAGCGGCCCGACGCGGCCAAGCTCGCGCAACTGATGTGTCGTCGACGGCTGCATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTCGCCACGGTGGCAAAACGCTCGTTTTTCGTACCCCGCCAGGTCTGCAAGCGCCGCAGTGCCATGCCAGAGGCTCGATACGACTCGATCAAGGGTCCT GTCAGGGTTTAAGGGGATAGGTGTCTGACGGCGATTGTGCTAACATCCAGCGGTTTTCAGGGGTGCATCGAGGTGTGCCCCCAGCGCCGTAGGTCCGAGG CGTAACTCGTTGATTTGTCGTAAGTCGCCGTTGGCATCTGCCAGCGGCGGCAAGCTTCGTTCTTCTCACAGGGAGGCAACGGAGTTTCACCAGAAAAAGG AATCAGGCTTCTCATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAGCTGAGACAGTCCTACCTCGACTACGCCATGAGCGTGATC GTCGGTCGTGCACTGCCTGATGCACGTGACGGCTTGAAGCCCGTGCATCGCCGCGTTCTGTTTGCGATGAGTGAGCTGGGCAACGATTGGAACAAACCCT
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| Amino Acid Sequence |
>methylthioribose-1-phosphate isomerase
MRDRLLAAERVKAVDWRGDALHLIDQRALPAQEVWQAFVDAPGVAGAIRSGLVLGASAVAICAAYAVVLAARLHRATGADWRHGLDEDLRMLAALRPATA NLSWALERMRERLGRVRADEDPLPALEAEALAIHQSDREANLTMAQLGVELIRRHQGNLQTVLTHANAGALASGGFGTALGVVRGAFHEGMLERVYVGET RPALQGSRLAAWELSREGVPLTVTADSAAAHLMKSKGITWVIVGAERIAANGDIAAPIGTYQLAVGAMHHGVRFMVVATSAAIDMALESGDDIPLLERDA RQLLDVAGTRIGADVEAFNPIHDVTPADLIDVIVTEKGIVERPDAAKLAQLMCRRRLH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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