Pseudomonas rhizosphaerae DSM 16299, LT40_RS03225

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Cellular Component	GO:0016020	membrane	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00304	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0000155	phosphorelay sensor kinase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:cd00082	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016772	transferase activity, transferring phosphorus-containing groups	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00344	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0016310	phosphorylation	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00344	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0007165	signal transduction	ISM Inferred from Sequence Model Term mapped from: InterPro:cd00082	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PRINTS	PR00344	Bacterial sensor protein C-terminal signature	IPR004358	Signal transduction histidine kinase-related protein, C-terminal	426	436	3.9E-11
PRINTS	PR00344	Bacterial sensor protein C-terminal signature	IPR004358	Signal transduction histidine kinase-related protein, C-terminal	463	476	3.9E-11
Pfam	PF00672	HAMP domain	IPR003660	HAMP domain	218	270	1.8E-10
SMART	SM00304	HAMP_11	IPR003660	HAMP domain	221	274	2.3E-8
CDD	cd06225	HAMP	-	-	224	269	2.21084E-5
CDD	cd00075	HATPase	-	-	379	475	4.56286E-28
Pfam	PF00512	His Kinase A (phospho-acceptor) domain	IPR003661	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	276	329	8.9E-7
PRINTS	PR00344	Bacterial sensor protein C-terminal signature	IPR004358	Signal transduction histidine kinase-related protein, C-terminal	439	457	3.9E-11
Gene3D	G3DSA:3.30.565.10	-	IPR036890	Histidine kinase/HSP90-like ATPase superfamily	336	480	2.4E-26
Gene3D	G3DSA:1.10.8.500	HAMP domain in histidine kinase	-	-	224	267	1.1E-5
PRINTS	PR00344	Bacterial sensor protein C-terminal signature	IPR004358	Signal transduction histidine kinase-related protein, C-terminal	408	422	3.9E-11
CDD	cd00082	HisKA	IPR003661	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	273	314	1.45651E-5
SUPERFAMILY	SSF47384	Homodimeric domain of signal transducing histidine kinase	IPR036097	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily	259	317	8.24E-11
Pfam	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	IPR003594	Histidine kinase/HSP90-like ATPase	375	478	4.9E-17
Gene3D	G3DSA:1.10.287.130	-	-	-	268	329	7.1E-14
PANTHER	PTHR44936	SENSOR PROTEIN CREC	-	-	7	476	2.4E-62
SMART	SM00387	HKATPase_4	IPR003594	Histidine kinase/HSP90-like ATPase	374	479	2.8E-23
SMART	SM00388	HisKA_10	IPR003661	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	275	340	3.6E-4
SUPERFAMILY	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	IPR036890	Histidine kinase/HSP90-like ATPase superfamily	334	477	5.37E-29
SUPERFAMILY	SSF158472	HAMP domain-like	-	-	223	271	1.7E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.