Pseudomonas putida H, AC138_RS26720 (gyrB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain H contig_9, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGTCTTCGAGCGAACCCTGAGCGAACTGGTCGAGCTGGACGGGTTGACCCTGAGCTACTACCGAGGCTGGGACAAGGACCGGGAACTGCAAGAAGTGCTC GCCTCCTCCCTCCTTCGCGATCAGCAGATGGGCCATACCCAAGCCGGTCCGCAGCGTGCTGATCTGCGTTTGCGGTTGGCTGGCAACAACGCAGCCGACA TCCTGTCGCGTGGTCAGCAAAAGTTGGTGGTATGCGCATTGCGCATTGCCCAAGGCCACCTCGTTAGTCAGGCTCGCCGCGGTCACTGTATTTATCTCGT GGATGACTTGCCGTCCGAACTGGATGACCAGCATCGCCGCGCACTGTGCCGCTTGCTTGAAGAATTACGCTGCCAGGTGTTCATCACCTGTGTAGATCAC GAATTACTGAGGGAAGGCTGGCAGACGGAAACGCCAGTTGCTTTGTTCCACGTGGAACAAGGCCGTATCACCCAGACCCACGACCATCGGGAGTGAAGGC
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| DNA Sequence for Gene |
>AC138_RS26720
|gyrB
ATGAGCGAAAATCAAACGTACGACTCCTCCAGCATCAAGGTGCTGAAAGGTTTGGATGCCGTACGCAAGCGTCCCGGCATGTACATTGGCGACACCGATG ATGGTAGTGGCCTGCACCACATGGTCTTCGAGGTGGTCGACAACTCGATCGACGAAGCCCTCGCCGGTCACTGCGATGACATTACCGTCATCATCCACCC GGACGAATCTATCAGTGTGCGCGACAACGGTCGCGGCATTCCGGTCGATGTGCATAAGGAAGAAGGCGTTTCCGCAGCCGAGGTCATCATGACTGTGCTG CACGCCGGCGGTAAGTTTGACGACAACTCCTACAAAGTATCCGGCGGTCTGCACGGTGTAGGTGTGTCGGTTGTGAACGCCCTGTCCGAGAAGCTGGTTT TGACTGTTCGCCGTAGCGGCAAGATCTGGGAACAGACTTACGTTCACGGTGTTCCACAAGCGCCCATGGCGGTTGTCGGTGACAGTGAAACCACGGGTAC CCACATCCACTTCAAGCCATCGGCTGAAACCTTCAAGAACATTCACTTCAGCTGGGACATCCTGGCCAAGCGCATCCGCGAGCTGTCGTTCCTCAACTCG GGCGTTGGCATTCTGCTGAAGGATGAGCGCAGCGGTAAGGAAGAGTTCTTCAAGTACGAAGGCGGTCTGCGTGCGTTCGTCGAGTACTTGAACACCAACA AGACGCCGGTCAACTCCCAGGTGTTCCACTTCAACGTTCAGCGTGACGATGGCGTGGGTGTTGAAGTCGCCCTGCAATGGAACGACAGCTTCAACGAAAA CCTGCTGTGCTTTACCAACAATATTCCGCAGCGTGATGGCGGTACCCACCTGGTGGGTTTCCGTTCCTCGCTGACCCGTAGCCTTAACAGCTACATCGAG CAGGAAGGCCTGGCCAAGAAGAACAAGGTGGCAACCACTGGCGACGACGCCCGTGAAGGCCTGACCGCGATCATCTCGGTGAAGGTACCGGACCCGAAGT TCAGCTCGCAGACCAAGGACAAGCTGGTCTCCTCGGAGGTGAAAACCGCCGTGGAACAGGAGATGAACAAGTACTTCGCCGATTTCCTCCTGGAAAACCC GAACGAGGCGAAGGCCGTCGTTGGCAAGATGATCGACGCCGCTCGCGCCCGTGAAGCCGCCCGTAAAGCCCGTGAGATGACCCGCCGTAAAGGTGCGCTG GATATCGCGGGTCTGCCGGGCAAGCTGGCCGACTGCCAAGAGAAGGATCCTGCTCTCTCCGAACTGTACCTGGTGGAGGGTGACTCCGCGGGTGGCTCGG CCAAGCAAGGCCGCAACCGTCGTACCCAGGCGATCTTGCCGCTGAAGGGTAAAATCCTCAACGTCGAGAAAGCGCGCTTCGACAAGATGATTTCGTCCCA GGAAGTGGGCACGCTGATCACTGCGCTGGGCTGTGGCATCGGCCGCGAAGAGTACAACATCGACAAACTGCGTTATCACAACATCATCATCATGACCGAT GCTGACGTTGACGGTTCGCACATCCGTACGCTGCTGCTGACCTTCTTCTTCCGTCAGCTGCCGGAGCTGGTCGAGCGTGGCTACATCTATATTGCCCAGC CGCCGCTGTACAAGGTGAAACGAGGCAAGCAGGAGCAGTACATCAAGGACGATGAGGCCATGGAAGAGTACATGACCCAGTCGGCTCTGGAAGATGCCAG CCTGCACCTGGACGAATCGGCGCCAGCAGTTTCCGGCGTGCAGCTGGAAGCGCTGGTGAATGAGTTCCGTAGTGTCATGAAGACTCTCAAGCGCCTGTCG CGCTTGTACCCGGAAGAGCTGACCGAGCACTTCGTCTACCTGCCTGAGGTGACCCTGGAGCAGTTGGGTGACCACGCAGTGATGCAGGCCTGGCTGGCCC AGTTCCAGGCGCGTCTGAACTCCAGCCAGAAGTCTGGCCTGGCTTACAACGCCAGCCTGCGTGAAGACAAAGAGCGCAACGTATGGCTGCCTGAAGTGGA AATTACCTCTCACGGTCTGGCCAGCTACATCACCTTCAACCGCGATTTCTTCGGCAGCAATGACTACCGTACCGTAGTCAACATTGGTGCCAAGCTTTCG AGCCTGTTGGGTGAAGGTGCGTACGTGCAGCGCGGTGAACGCCGCAAGGCAATCGTCGAGTTCAAAGAGGGCCTGGATTGGCTGATGAACGAGACCACCA AGCGCCATACGATTCAGCGATACAAAGGGCTGGGTGAGATGAACCCGGATCAACTGTGGGAAACCACCATGGACCCGACCGTTCGCCGTATGCTCAAGGT CACGATCGAAGATGCTATCGCCGCTGACCAGATCTTCAACACCCTGATGGGTGATGCGGTCGAGCCGCGTCGTGACTTCATCGAAAGTAACGCGCTGTCG GTGTCGAACCTGGACTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTC GCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGAAGTGATTTGATGGGGCG CTGGAAGTGCTGAGAGGGTCGGCGGGCGGATCTGAGCAGCAGAGAGATTGAGAGGACTTTAAAACTAATATTTGAACACCTTAATAGTTAATTAAGCGTA CGTGTTAAGTATTAATTTGAACAATTTAGTATGGAAATGGAATTTGGTGGAAGTTGCCATTTTGGATTTTTTGTAGATTTCGAAGGGATGTTGGAATAAG ATCTATGACCAACTTTTCCGCTTTGCACTGAAGATTTTCAGCCAAATCAGCTGTTTGAAGCGAGAGCTTCAGACCTGATCCAAATTGCTCCAGCGATCAC
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| Amino Acid Sequence |
>DNA gyrase subunit B
MSENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDITVIIHPDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVL HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSETTGTHIHFKPSAETFKNIHFSWDILAKRIRELSFLNS GVGILLKDERSGKEEFFKYEGGLRAFVEYLNTNKTPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYIE QEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGAL DIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTD ADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQPPLYKVKRGKQEQYIKDDEAMEEYMTQSALEDASLHLDESAPAVSGVQLEALVNEFRSVMKTLKRLS RLYPEELTEHFVYLPEVTLEQLGDHAVMQAWLAQFQARLNSSQKSGLAYNASLREDKERNVWLPEVEITSHGLASYITFNRDFFGSNDYRTVVNIGAKLS SLLGEGAYVQRGERRKAIVEFKEGLDWLMNETTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAIAADQIFNTLMGDAVEPRRDFIESNALS VSNLDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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