Pseudomonas putida H, AC138_RS26455
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain H contig_9, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCGGCCCGATGCTGCTCAAGGTAGTCACCCCGATCAGCGCCGAGGACACCGGCGGCACCTTGCACGATCGCCTGGCCGAAATGGGCCCGCCCGCAGTGG TTCAGGCCATCGCCGGCCTGGCTGACGGTTCGCTGCAAGGCGAAATACAGGACGATGCCCTGGCCACCTACGCGCACAAACTGAACAAGGACGAAGCGCG TATCGACTGGACCCACCCGGCTGTCGAGCTGGAACGCCTGATCCGCGCCTTCAACCCATGGCCGGTGTGTCACAGCACTCTGGATGGTGAAAGCGTCAAG GTGCTGGCCGCCAACCTGTCCACAGGCCAAGGCGCCCCAGGCGAGATACTTTCCGCCAGCAAGGACGGCCTCGTAGTTGCGTGCGGTGACCAAGCCCTGA GCCTGACCCGCCTGCAACTGCCTGGCGGCAAGGCATTGAGCTTCAGTGACCTGTTCAACAGCCGCCGCGAGAAGTTCGCCGCCGGCAAGGTGCTGGGCCA
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| DNA Sequence for Gene |
>AC138_RS26455
ATGAACCCACGCCTCGCCGCCGCCCGTGCGCTGGCCGCTGTGCTCAGCGGCAAGGCTTCGCTGAACAGCTCGCTGCCGGCGCAACTGGACAAGGTAGATG AACGCGACCGCGGCCTGACCCAGGACCTGGCGTTCGGTACCGCACGCTGGCAGCCACGCCTCGACCTGCTGGCCGCACAGCTGCTGCAAAAGCCCTTCAA GGCAGCCGATGCCGATGTTCAGGCGCTGCTGCTGGTCGGCCTGTACCAGCTGTTCTACACGCGCATTCCGGCCCATGCCGCCATCGGCGAGACCGTGGGC TGTGCCGACAAACTGAAGAAGCCGTGGGCCAAGGGCCTGCTCAATGCCGTGCTGCGCCGTGCCCAGCGCGAAGGCGAGGAGCTGCTCGCCGGCATGGAGC GCGACCCGGTGGTGCGTACCGCGCACCCGCGCTGGCTGCAGAAGGCGCTGAAAGCCTTCTGGCCAGAGCAGTGGGAGGCCATCTGCGCCGCCAACAATGC CCACCCTCCGATGATTCTGCGGGTCAACCGCCGTCACCATAGCCGCGATGCCTACCTGGCACTGCTGGCCGAAGCCGGCATCGGCGCCAGCGCATGCCAG TACAGCCGGGATGGCATCGTGCTGGCCGAAGCCTGCGACGTGCGCGGCCTGCCAGGCTTCGCCGAAGGCTGGGTGAGCGTGCAGGACGAAGCTGCGCAGC TATCTGCCGACCTGCTGGAACTGGCCCCCGGCCAACGCGTGCTCGATGCTTGCTGCGCACCGGGCGGCAAGACCTGCCACCTGCTGGAGGCCGAGGCTGG CCTGGCGAACATGGTGGCCATCGACCTCGAAGCCAAGCGCCTGACCCGCGTGCGAGAAAACCTCGACCGCCTGCAACTGGACGCCGAGCTGATCGCCTGC GATGCCCGCGACACTGCCAGCTGGTGGGACGGCAAGCCATTCCAGCGCATTCTGCTCGACGCGCCGTGCTCGGCCACCGGCGTGATTCGCCGCCACCCGG ACATCAAGATGACCCGCCAAGCCGACGACATCCCGGCTTTGGCCACGCTGCAAGGCGAGCTGCTCGATGCCCTGTGGCCGACCCTGGAAGTGGGCGGCAT GCTGCTATACGCCACCTGCTCCACATTGCCGACCGAGAACACTGAAGTGATCAAAGCCTTCCTCGCGCGCACCCCGGGCGCTCGTGAGCTGGACCTGGCG ACCGAAGCCGGCCTGCGCCAGCCCCACGGCCGTCAGTTGCTGGCCCAGGAAGGCGGCCACGACGGTTTCTACTATGCCAAGCTGATCAAGATCGCCGCCT CGCGCGGATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAACAAAGGATAGGGAGTAGCGCATGAAGATCATCATCCTCGGCGCAGGGCAGGTAGGCGGTACGCTGGCTGAACACCTGGCCAGCGAAGCCAACGACAT TACCGTGGTCGACACCGACGGCGACCGCCTGCGCGACCTCGGCGACCGCCTGGACATCCGCACCGTCCAGGGCCGTGGCTCACTGCCGACGGTACTGCGT CAGGCCGGTGCCGACGACGCCGACATGCTGGTGGCGGTAACCAACAGTGACGAGACCAACATGGTTGCCTGCCAGGTGGCCTATTCGCTGTTCCATACCC CGACCAAGATTGCACGGGTGCGCGAATCGTCCTACCTGACCCGCGAAGAGCTGTTCGACAACGACCATATCCCGGTCGACGTTCTGATCAGCCCCGAGCA GGTGGTGACCAATTACATCAAGCGCCTGATCGAACACCCAGGCTCGCTGCAGGTGATCGATTTCGCCGAGGGCAAGGCCCAGCTCGTGGCAGTGAAGGCC
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| Amino Acid Sequence |
>ribosomal RNA small subunit methyltransferase B
MNPRLAAARALAAVLSGKASLNSSLPAQLDKVDERDRGLTQDLAFGTARWQPRLDLLAAQLLQKPFKAADADVQALLLVGLYQLFYTRIPAHAAIGETVG CADKLKKPWAKGLLNAVLRRAQREGEELLAGMERDPVVRTAHPRWLQKALKAFWPEQWEAICAANNAHPPMILRVNRRHHSRDAYLALLAEAGIGASACQ YSRDGIVLAEACDVRGLPGFAEGWVSVQDEAAQLSADLLELAPGQRVLDACCAPGGKTCHLLEAEAGLANMVAIDLEAKRLTRVRENLDRLQLDAELIAC DARDTASWWDGKPFQRILLDAPCSATGVIRRHPDIKMTRQADDIPALATLQGELLDALWPTLEVGGMLLYATCSTLPTENTEVIKAFLARTPGARELDLA TEAGLRQPHGRQLLAQEGGHDGFYYAKLIKIAASRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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