Pseudomonas putida H, AC138_RS21710
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain H contig_41, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TACCGAGCTTGAAAGGTTGCAAGTGGTCAACCGCTTCTTCAACCAGCAATTGCGGTATGTCGAGGATATCGATCTGTGGCATGAGGTCGACTACTGGGCC ACACCTGTGCAGGCACTGATCAAAGGTGCAGGGGACTGCGAGGATTACGCCATCGCCAAATATTTCAGTCTACGGCGCATGGGAATCCCCAGCGAAAAAC TGCGCATCACCTACGTCAAGGCGCTGCGGCAGAACCGGGCACACATGGTCCTGACCTATTATTCAAGCCCACAGGCCCAGCCTTTGGTGCTGGACAGTCT GATGGATGCCATAAAGCCGGCAAGCCAGCGTACCGACCTGCTGCCGGTGTACGCCTTCAATGGCGAGGGGTTGTGGCTGACGGGCGCGGCAGGGAACAAG AAGGTTGGTGATACCAAGCGGCTGTCACGCTGGCAGGATTTGTTGAAGAAAATGCAGGCCGAAGGGTTCCCGGCCGAGCCGGTTTACTGAAGGAGCACAG
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| DNA Sequence for Gene |
>AC138_RS21710
ATGTCACTGTTCAAACAATTGCTGTTGGCCATTTGCCTGTTCCTGGTGGTCGCCTTCAGTGGCAGTTTCATGGTCAGCCTGGAAAGCTCGCGCAGCCAGT ACGTCAACCAGCTGCGCTCGCACGCCCAGGATGCGGCCACCGCACTGGCGCTTTCGCTGACGCCGAATATCGACGACCCAGCGATGGTCGAGCTGATGGT CAGCTCGATTTTCGACAGTGGTTACTATGCAAGCATCAAGGTCGTCGACCTGGGTTCCAACGCCGTGCTGGTGGAGCGTCACGCCGAGCCAGACCCTGGT GGTGTGCCGCTTTGGTTCGTGCGCCTGATCGGCCTCGAGGCCGCCGGCGGCGATGCAATCGTCAGTCGTGGCTGGCAGCAGGCCGCGCGCGTTGAAGTGA TCAGCCACCCGATGTTCGCCATTGCCAAGCTTTGGCAAAGCGCCTTGGGCAGCCTGGGTTGGTTGCTGTTGTGCGGTGCGGCCAGTGCCGTGCTCGGTGC TTTGCTGTTGCGCCGCCAGTTGAGGCCGCTGGACTACATGGTAGAGCAATCTCACGCTATTGCCCGCCGCGAATTCCTCAGCCTGCCAGAGTTGCCACGC ACGCCGGAGCTACGCCGCGTAGTGCAAGCGATGAACCAGATGGTCGAGAAACTCAAAGCCCTGTTCACCGAGCAGGCCGAGCGCAGTGAGCGGCTGCGTG CGGAGTCCTACCAGGACAGCCTGACCGGGCTGTCGAACCGCCGCTATTTTGAAATGCAGCTGAACAATCGGGTAAGCAACCTGGAAGACGCGCGCGCCGG TTACCTGCTGTTGCTGCGGGTTCAGGGCCTGGCTGGCCTGAACGCCCGCCTTGGCGGCCAGCGTACCGACCAGTTGTTGCAAGCGGTAGGTGAACAGCTG CGTCGTACTTGTGCCAGCTACCCGGAAACCAACGACCTCATTTCCCGCAGCCGCGGCGGCGAGTTTGCAGTGCTGGCACCGGGCATGGTGCATGAGGAGG CAGTACACCTTGCCCAGGCTCTGGAGGCAACGTTGCAGAGCCTGCACGAAACGGGGGCCAGTGATATCGACCCGGTGGCTTGTATAGGCCTGGCGCCATT CAGCCCTGGTGATTCACCCCAGGCATTGCTGAAGCTGGCCGACGAGGCTCTGGCCCGCGCTGAGAACCAGCCAACGCCGGGCTGGGTATGCCTTGAGCAA GGTGTTGCTGCGGTTGCTGCGGATAGTCAGCATGCCTGGCACGAACGGCTCGACCAAGCGTTCATCAATGGGCATTTCGAGTTGTTCTTCCAGCCAGTGA TAGAGTGCGCTTCCTCGCAACGGGTACTGCACCACAAAGTTATTTCGCGTTTGCGCGATGGCCAGGGCGAGGCCTTGCCGGCGGGCCGCTTCCTGCCTTG GCTGGAGCGCTTCGGCTGGATGCCGCGGCTGGATGTGCTGGTGCTGGAGAAAGTGTTGGCGCACCTGCGAGGGCATGACCAAGTGCTGGCGTTGAACCTG TCCGCCGCCACCCTGGCCGACCCCAAGGCCCTTCAGCGCGTTTTCGAGCTGCTGGGCCAGAATGCGGCGCTCGGTCCGCGGCTGGTTTTTGAAATTGGCG AGGAGCAGTTGCCTGAGCAGGCAGCGTTGGAGCAACTCACCCGGCGCCTGCATGGGCTTGGCTTCGGGTTGGCTTTGCAACGCTTCGGTGGGCGCTTCAG CATGATTGGCAACCTGGCGCATTTGGGCCTGGCGTACCTGAAGATTGACGGCAGTTACATCCGCAACATCGATCATGAGCAGCACAAGCGGCTGTTCATC GAAGCGATCCAGCGTGCGGCGCATAGCATCGACCTGCCGCTGATTGCCGAGCGAGTCGAGACGGAAGGGGAGCGGTTGGTGTTGCTGGAGATGGGAGTAG GCGGGATTCAGGGGCAACTGGTGGGTGAGCCTGCGCCTTGGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATGGCCTCTCGCGTGCCGCTGTAGGCGTGGGCTAGAGCCGCAAAAGGGCCGCGTAGCGGCCCCCAGGTTCACGTAGCGATTTGCAGGGCTGCTTGTACAG CCCTGTCGCGACATGAGGCCGCTCCTAAAGCAATGGCGAAACCCGCAGGTTGGCTATCACCGCTCGCGCAGCGCTTCCGAACGCGCCTTCATGATCGGCT TGAGCAGGTAGCTCATGATGGTTTTCTTGCCTGTCATGATGTCCACCGTCGCCACCATCCCCGGAATGATCAGCAGTGGCTTCTCGTCAGTCCCCAGGTG GCTGCGATCAGTGCGCAGCTTGATCAGGTAATACGTAGTCTTCTTGTCTTCATCGGTAATGGTGTCGGCGCCAATCTGCTCCAGCTTGGCCTTGAGCCCA CCGTAGATGGTGTAGTCATACGCGGTGAACTTGACCGTCGCTTCCTGGCCAGGGTGCAGGAAGGCGATGTCTTTGGGCAAAATTTTCGCCTCAATGACCA
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| Amino Acid Sequence |
>diguanylate cyclase
MSLFKQLLLAICLFLVVAFSGSFMVSLESSRSQYVNQLRSHAQDAATALALSLTPNIDDPAMVELMVSSIFDSGYYASIKVVDLGSNAVLVERHAEPDPG GVPLWFVRLIGLEAAGGDAIVSRGWQQAARVEVISHPMFAIAKLWQSALGSLGWLLLCGAASAVLGALLLRRQLRPLDYMVEQSHAIARREFLSLPELPR TPELRRVVQAMNQMVEKLKALFTEQAERSERLRAESYQDSLTGLSNRRYFEMQLNNRVSNLEDARAGYLLLLRVQGLAGLNARLGGQRTDQLLQAVGEQL RRTCASYPETNDLISRSRGGEFAVLAPGMVHEEAVHLAQALEATLQSLHETGASDIDPVACIGLAPFSPGDSPQALLKLADEALARAENQPTPGWVCLEQ GVAAVAADSQHAWHERLDQAFINGHFELFFQPVIECASSQRVLHHKVISRLRDGQGEALPAGRFLPWLERFGWMPRLDVLVLEKVLAHLRGHDQVLALNL SAATLADPKALQRVFELLGQNAALGPRLVFEIGEEQLPEQAALEQLTRRLHGLGFGLALQRFGGRFSMIGNLAHLGLAYLKIDGSYIRNIDHEQHKRLFI EAIQRAAHSIDLPLIAERVETEGERLVLLEMGVGGIQGQLVGEPAPWR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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