Pseudomonas putida H, AC138_RS20085
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain H contig_38, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGGCACGCAAGCACCCCAAGACACACATTGTCGAAACGCTGTACACCCACCGTAGCTAGTGGTGGCTGGCCTCATCGCCGGCAAGCCCACGGTGAGGCCG ACTCCGCCAACACAAGCCTCAGGAAACACCATATGATGTGCCTTCAAATTTAAACTGGCACAACATATAGGTTGGCGCTACACTCTCCCCCCGTAGAAGA AGCCACCCGCTTCGTGAACGGACGCACGCCAAACCGGTCAAAAAAGTTACCCTCGCCGGCAAGACACGCGCCCCGATCGAAGGTGAATTCCGGTATACTT TGCGCCCTCTGAAAAGAGCACCTATTCAATTGTCCTGGCCCCTCCCAGAGGCCTGGCCAGGTACAAGCCAGAACACATTCAGATGTAAACGAGAGTCAGC CTCTCGAGCTGCCCATTCGCCATTACGGCCTTGCGTCAGGCATCACATTCTTAAAATCCAACCGGTTGCCTCTGGGCGACCCTCAAGCAGGAGCCAAACC
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| DNA Sequence for Gene |
>AC138_RS20085
ATGCTGAGCTGGGACGAATTCGACAAAGAAGACGGCGAAGTAGCCGCCAAAGGCAACACCCCTGCGCAGGCCGCTGCCGCCGCCACCCTCGACAAGCTCG ACAGCGCCGGTGGTGCCGCCGCCCTGGAGGCCCGTGCGGCCACCGCTTCTGACTCCGAAGCCGTCAAACGTGCCAAGGCTGCCCTCGACGCCCTCGACGT TGCCGAAGGCCTGGCCGAGCTGGAAGGCTCCTCGGCCCGCGTTGCAGTCGATGAAAAGCGCATGATCAACTGCCGCGCCGACCTCAACCAACTGGTACCG TTCAAGTACGACTGGGCCTGGCAGAAGTACCTGGACGGCTGCGCCAACCACTGGATGCCGCAAGAGGTCAACATGACCGCCGACATCGCCCTGTGGAAGA GCCAGGACGGCCTGACCGAAGACGAGCGCCGCATCGTCATGCGCAACCTCGGCTTCTTCTCCACCGCCGACTCGCTGGTTGCCAACAACCTGGCCCTGGC CGTGTACCGCCTGATCACCAACCCGGAGTGCCGCCAGTACATCCTGCGCCAGGCCTTCGAAGAGGCGATCCACACCCACGCCTACCAGTACTGCATCGAG TCGCTGGGCATGGATGAAGGCGAGATCTTCAACATGTACCACGAGATTCCGTCGGTCGCTAAAAAAGCCGCCTGGGGCCTGAAGTACACCCGCGCCATCT CCGACCCGGAATTCAACACCGGCACCGTCGAAACCGACAAAGAGCTGCTGCGCAACCTGATCGCCTACTACTGCGTACTGGAAGGCATCTTCTTCTACTG CGGCTTCACCCAGATCCTGTCCATGGGCCGCCGCAACAAGATGACTGGCGTTGCCGAGCAGTTCCAGTACATCCTGCGTGACGAGTCGATGCACTTGAAC TTCGGTATCGACGTGATCAACCAGATCAAGATCGAAAACCCGCACCTGTGGGATGCGGCGATGAAGGAAGAAGCGACCCAGATGATCCTGCAAGGGACCC AGCTGGAGATCGAATACGCCCGAGACACCATGCCACGCGGCGTGCTGGGCATGAACGCAGCGATGATGGAGGATTACCTCAAGTTCATTGCTAACCGTCG TTTGACTCAGATTGGTTTGAAAGAAGAGTATCCGGGGACTACCAACCCGTTCCCATGGATGAGCGAGATCATGGACTTGAAGAAGGAGAAGAACTTCTTT GAGACGCGTGTGATCGAGTATCAGACGGGTGGGGCGTTGAGCTGGGATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGACCGGGCTGAGCATCAACAAGGCTGCCAAATGGCAGCCTTTTTATTGCCTGGCAGAAGCAGAACAGGACGTTTCCTACGGCTGCCGACCTTGCCTGT TTTTGGACATCGCGATAACGTTTTCCGGCGCTTAAGAACGCTCACATAGCGGAATCCCGTTCTCGTCAGAAACGGCTCTCCCCCATCAGGATGGCCAAAC ATGGACAATCTTAATACCCCCACCCTCTTCATCCGCCACAACCGCCCCTCCACACTATCTGGCCCGAATCCCAAGCCTGGTTCTGCGCCCACGAACTCGG CCGGCTGAGCGGTCATTTCTTCGACGAACAATGCATGCGCAAGCTCGACGCGGATCAGTACCGCACTGTGCCGCTAGTGCGCTATGGCAAATACCAGGAG ACCACCATGGTCAGTGAGTCCGGGGCCTAGACCTTGCCGGCGCATCACCATGTGCCAGAGAACCGCCATTTGCGCTGGCGCAAGTGTGCAGCGGGCGTTG
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| Amino Acid Sequence |
>ribonucleotide-diphosphate reductase subunit beta
MLSWDEFDKEDGEVAAKGNTPAQAAAAATLDKLDSAGGAAALEARAATASDSEAVKRAKAALDALDVAEGLAELEGSSARVAVDEKRMINCRADLNQLVP FKYDWAWQKYLDGCANHWMPQEVNMTADIALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEAIHTHAYQYCIE SLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLN FGIDVINQIKIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFF ETRVIEYQTGGALSWD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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