Pseudomonas putida H, AC138_RS19995 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain H contig_38, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGGGTGGAAATAATGGAAAAGCATCTCTTCGATCGTCTTGTGGAAAGCATGACTCAGATGGATGAGATCGATCGCGGTGAGCGTCAGCCCTCGCGTGAGT TCCACGTAGACGCACTTCAAGTCAAAAAGATTCGTCAAGCCACTGGCCTTTCCCAGGCTGCGTTTGCCAAACGTATCGATGTCGCAGTAGGAACTCTACG GAATTGGGAACAGGGCCGTCGCGAACCTGAAGGACCAGCTCGTGCCTTGCTTCGAGCGATTCATAACGATCCCGAACATGTACTTGCGGCCTTGAGCTAA GTACACGAAAGCCACCAGGCCCTAGAAGGTACCCCGGCACAACGGCGCGAAGCATAGCGCAGCGTTAGTCGTATTTCTGCTGGTCAAGCGCCCTTGCGCT CGCTAGAATTGCGCACTTTTTGATCAGAGGCGCCAAAAGCGCCCGTCAAGTTCGCCCCCGATTCCGGCCGGGCGACCTGCATTCAATACCGAGGTTAGTC
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| DNA Sequence for Gene |
>AC138_RS19995
|rimO
ATGTCCACCACGCCCGCCACCCCCAAGGTAGGTTTCGTAAGCCTGGGTTGCCCAAAAGCCCTGGTCGACTCCGAGCGCATCCTGACCCAGCTGCGCATGG AAGGCTATGAAGTCGTACCCACCTACGAGGACGCCGACGTGGTGGTGGTCAACACCTGCGGCTTCATCGACAGCGCCAAGGCCGAATCGCTGGAAGTGAT CGGCGAAGCCATCAAGGAAAACGGCAAGGTGATCGTCACCGGCTGCATGGGCGTCGAAGAAGGCAGCATCCGTGACGTGCACCCAAGCGTGTTGTCGGTC ACTGGCCCGCAGCAGTACGAGCAGGTAGTCAACGCCGTTCACGAAGTGGTGCCGCCGCGTCAGGACCACAACCCGCTGATCGACCTGGTGCCGCCACAGG GCGTCAAGCTGACCCCGCGCCACTATGCCTACCTGAAGATCTCCGAAGGCTGCAACCACAGCTGCAGCTTCTGCATCATCCCGTCGATGCGCGGCAAGCT GGTCAGCCGCCCGGTGGGTGAAGTGCTGAGCGAGGCCGAGCGCCTGGTCAAGGCCGGAGTCAAGGAAATCCTGGTGATTTCCCAGGACACCAGCGCCTAC GGCGTCGACGTCAAGTACAAGACCGACTTCTGGAACGGCCGCCCGGTCAAGACCCGCATGCTCGAGCTGTGCGAAGCACTGAGCAGCCTGGGCGCCTGGG TACGCCTGCACTATGTGTACCCTTACCCGAATGTTGACGACGTGATCCCGCTGATGGCTGCCGGCAAGATCCTGCCGTACCTGGACATCCCATTCCAGCA CGCCAGCCCGAAAGTGCTCAAGTCGATGAAGCGCCCGGCCTTCGAAGACCGCACCCTGGCACGCATCAAGAACTGGCGCGAGCAATGCCCTGAGCTGGTG ATCCGTTCCACCTTCATCGTCGGCTTCCCGGGCGAGACCGAGGAAGACTTCCAGTACCTGCTGGACTGGCTGACCGAAGCCCAGCTCGACCGCGTGGGCT GCTTCCAGTACTCGCCGGTAGAAGGCGCCCCGGCCAACGACCTGGGCCTGGCCGAAGTACCGGACGACGTCAAGCAAGAGCGCTGGGACCGCTTCATGGC CCACCAGCAGGCCATCAGTGCTGCCCGCCTGCAATTGCGCATCGGCAAGGAAATCGACGTGCTGATCGACGAAGTCGAGGAACAAGGTTCGGTTGGCCGC AGCTTCTTCGATGCACCGGAAATCGACGGCAGCGTGTTCATCGATGGCGACCATGGTTTCAAGCCAGGCGACAAAGTGCGTTGCCGTGTGGTGGATGCCG ACGAGTACGACATGTGGGCTGAACCCATCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACGGCTGAAGCCTGCAAAGCCCCTGCCCCGGCGTTCTCCATAGGGAATGACCGGCGCAGGGGCTTTTTTGTCAGAACGTGTGAAACAGCATCAGGCCGC CCTCGGCATCCGGGCTGGCATCCGAGAAGCCTTTGACTGCATAGAGTTGGACTTTCCACTGCGGGTTGAGCTTGTGGGTGAGGAACAGGGTAAGCTCCTT GATCTGCGCCCCGGTCGAGACCACTTTCTGCCGCCAATCGTAGGAGGCGCCGGCCGAAGTACCGACCGCCACCGGCAGGGCAAAGCCGAGACTGGCAAAT ACCGGGTCATCGAAGTCGCTATCGGGCGGGTCACCGAACTTCTTCCAACCCAGCGTCGCGAAACCGGTGACCGGGCCAAAGCCCTTGGCTATGTCGACCT GGGTGGTGTAGTCGTACTGGCCGGTGCCCAGGCACTGGTCTTCATCAGCGGTAGGGAATTTGACCTTGCCGATCAGGTCCAGCATCAGGCCGCCGTCACG
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase RimO
MSTTPATPKVGFVSLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEVIGEAIKENGKVIVTGCMGVEEGSIRDVHPSVLSV TGPQQYEQVVNAVHEVVPPRQDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGEVLSEAERLVKAGVKEILVISQDTSAY GVDVKYKTDFWNGRPVKTRMLELCEALSSLGAWVRLHYVYPYPNVDDVIPLMAAGKILPYLDIPFQHASPKVLKSMKRPAFEDRTLARIKNWREQCPELV IRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANDLGLAEVPDDVKQERWDRFMAHQQAISAARLQLRIGKEIDVLIDEVEEQGSVGR SFFDAPEIDGSVFIDGDHGFKPGDKVRCRVVDADEYDMWAEPI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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