Pseudomonas putida H, AC138_RS17125
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain H contig_31, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGTTCCTGGTGCTGGCCGCCCAGTACGAAAGCTGGAGCCTGCCGCTGGCGGTGATCCTGATCGTGCCGATGACCCTGCTGTCGGCCATCACCGGTGTGA TCGTATCGGGTGGCGACAACAACATCTTCACCCAGATCGGCCTGATCGTACTGGTGGGCCTGGCGTGCAAGAACGCGATCCTGATCGTCGAGTTCGCCAA GGACGAACAGGCCAAGGGCCTCGACCCGCTGGCTGCGGTACTGGAAGCCTGCCGCCTGCGCCTGCGGCCGATCCTGATGACCTCGATCGCCTTCATCATG GGTGTGGTGCCCCTGGTGTTCAGCTCCGGCGCAGGTTCGGAAATGCGCCATGCCATGGGGGTGGCGGTGTTCTCGGGGATGATCGGCGTGACCGTGTTCG GCCTGTTCCTCACCCCGGTGTTCTTCTTCCTGATCCGCCGTTTCGTCGAGCGTCGCCAGGCCCGCAAGGCTGAACACGCTCAAGTGCTGGAGAACCACGC
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| DNA Sequence for Gene |
>AC138_RS17125
ATGAACCTGCTCAAACCCTTGACCCCAAGCCTGCTGGCACTGGCCCTGGCGGCCTGTGCGGTAGGCCCGGACTACCAGGCGCCAGCCACCGAACCTGCGC AATTGAGCAGCGATGTGCAGGCCAAGGCCTACGACCGTAGCCGCTTCGAGAGCCTGTGGTGGAAGCAGTTCGACGACCCGGTGCTGAACCAGCTGGTGCA GGCTTCGCTGGACGGCAACCGTGACTTGCGCGTGGCCTTCGCCCGCCTGAAATCGGCCCGTTCGATCCGCGAAGACGCCGAAAACGACCCGTTCCCGGTG GTCACCAGCCGTGCCAGCAGCGATCTCGGCAAAGGCCAGATCCCCGGCCAGACCACCGAGCGGGTCAATAGCGAGCGCTACGACCTGGGCCTGGACATGG CCTGGGAGCTTGACCTGTTCGGGCGCATCCAGCGCCAGATCGAAGCCAGCGAAGCCCAGGAAGCGGTTGCCGCCGCCGACCTGCAACAGTTGCAGGTCAG CCTGATCGCCGAACTGGTCGATGCCTACGGGCAACTGCGCGGTGCCCAGTTGCGCGAAAAGATCGCCCTGGCCAACCTGAAGACCCAGCAGGAATCACGC ACCATTACCGAAACCCTGCGCGATGCGGGCGTGGGCAATGACCTCGACGTGGTGCGTGCCGATGCGCGCCTGGCCGGGGTCGAAGCCACCGTGCCACAAC TGCAAGCCGAACAGGCACGGGCGCGGCATCGCATCGCCACCCTGCTCGGCCAGCGCCCTGACGCGCTCAGCGTAGACCTGTCGCCCAAGGCCCTGCCGGC CATCGCCAAGGCGCTGCCGGTCGGTGACCCGGGTGAGCTGCTGCGCCGCCGCCCGGACATCCGCAGCGCCGAGCGCCAGCTGGCGGCGGCCACCGCCAAC GTTGGCGTGGCCACCGCCGACCTGTTCCCGCGCGTCAGCCTCAGTGGCTTCCTCGGCTTTACCGCCGCCCGCGGCTCGCAGATCGGCTCTTCGGCGGCCA ACGCCTGGGCACTGGGCCCGAGCATTACCTGGGCGGCCTTCGACCTGGGCAGCGTGCGGGCCCGCCTGCGCGGCGCCAAGGCCGATGCCGAAGGGGCACT GGCCAACTACGAACAGCAGGTGCTGCTGGCACTGGAAGAGTCGGCCAACGCCTTCAGCGATTACGACAAGACCCAACAGCGTCTGCTGTCGCTGATGCGC CAGAGCGACGCCAGCCGCAAGGCTGCAGAACTGGCCTCGATTCGCTATCGCGAAGGTACCGTGGACTACCTGGTACTGCTCGATGCCGAACGTGAGCGGC TAAGTGCTGAAGATGCACAAGCTCAGGGTGAAGTCGACCTTTATCGCGGCATCGTCTCGATCTACAAGGCCCTGGGTGGCGGCTGGCAACCGGAGACGGT GGCCAGCGCGCACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCCACTGCCTCAACGACTCCTTTGGTTGGCTCCTCCCCCAACCGTTTGCCCCGCAGGCCATGGCCCGCGGGGCTTTTTTATGTTTGCCATCGTATTCAC CCCAATACGCAGTGCATGGAATGCCACCGCAGGCCTGGCGCCTGGCCAACGGCGTGCCCGGTTCGGTTGCATTTACCCCCCGGCTGGCCCAAGCTCTGCC CTTCCCGCCGCCACGGATCGTCCGATGCCCAGACGCAACCGCTACCTGATCGCCCTGCTGTTGTCGATTCTGGTATCGGCCCTGTTCGGCTACCTGTGGC GCGACGCCCCGCCAACCCCGCCGACCTTGCCAGCACACAGCTACGCCAAGGCGCTGCGCCAGGCTCACGACGGCCAGCCCGGTGCCGCACGGGTGTTGTA CCAGCAATTGCAACGTAACGACCTGCCTGCGATCCGCCGTGCGGCGCTGTACGCCGAGTTGCCCAACTACCCCTCGCCGCAGGCATTGAAACTGGCCCGC
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| Amino Acid Sequence |
>RND transporter
MNLLKPLTPSLLALALAACAVGPDYQAPATEPAQLSSDVQAKAYDRSRFESLWWKQFDDPVLNQLVQASLDGNRDLRVAFARLKSARSIREDAENDPFPV VTSRASSDLGKGQIPGQTTERVNSERYDLGLDMAWELDLFGRIQRQIEASEAQEAVAAADLQQLQVSLIAELVDAYGQLRGAQLREKIALANLKTQQESR TITETLRDAGVGNDLDVVRADARLAGVEATVPQLQAEQARARHRIATLLGQRPDALSVDLSPKALPAIAKALPVGDPGELLRRRPDIRSAERQLAAATAN VGVATADLFPRVSLSGFLGFTAARGSQIGSSAANAWALGPSITWAAFDLGSVRARLRGAKADAEGALANYEQQVLLALEESANAFSDYDKTQQRLLSLMR QSDASRKAAELASIRYREGTVDYLVLLDAERERLSAEDAQAQGEVDLYRGIVSIYKALGGGWQPETVASAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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