Pseudomonas putida H, AC138_RS16920
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain H contig_31, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCACCTGGACGAGGCCGTGATGACCCGCCCCTGGGGCCAGAACTCGTGCTGGAGCCACGAACCGCTGCTGAGCATCTTCCACGACGAAACCCAGGGCGGC GAAAAGATCTTCGTGCTGCTCGAGCGCATCATGCAATCGCCAAAGGAATTCCAGGATGTGCTGGAGTTCCTGTACTTCTGCTTTTGCCTGGGCCTGCAAG GCAAATACGCCCTTGACCCCAAGGGCGATGAAATCCTTCGCGCGTTGATCAGCCGGATGCACAAGGTCATTCGCCAACTGCGTGGCCCCACGCCGGAAAC AGTGAGCGACCCCTATAGCAACGTCGTCCATTGCCCCCACCGTATGCGCCGCTGGCAGTGGCCCTGGTGGACCCCGCTGGTCATCTCGGTCATCGCCATG GTCTGCGCCTACAGCTACTACAGCTACCGCCTCGACCTGCTAACCGCCGAAGTCGTCGAATCGCTCAACGCCATTCTGCAGCAGTAACGGGGGACGCCAC
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| DNA Sequence for Gene |
>AC138_RS16920
ATGCCCAGCCAATCCGATCTGCGCTTCACTTTCCAGCCGCTGGTTGGCCGTAGCGAGTTTGAGGTGGTGTCGTTCGAACTGGACGAAGCCATCAGCTCCC CGTTCCGACTACAACTGGAGCTGGTCAGTTTCGAAGACGATGTCGACTTCGCCCAGCTCCTCGACAAACCGGTGCTCTTCACCCTCTGGCAGGGTGAGCG CCCGTTGCGCTACGTGCACGGCCTGGTCAGCACCTTCAGCCAGGGAGAAACAGGCTTCGATCGCACCCGTTACCGGGCACTGGTCGAGCCCGTGCTGGCC CGCGCCGGGCTGCGCTCGAACTGGCGCATCTTCCAGCAGAAAACCGTGCCGCAGATTCTCGAGATCATGCTCAAGCGCCAGGGCGTGAATGCCTACGAGC TCAAGTGTCTCGACCCGCATCAGGTGCGCGAATTTTGCGTGCAGGCCGGTGAAACAGACCTCGACTTCATGGCCCGCCTGGCCGCCGAGGAAGGCATTGT CTACCGCTTCGACCACACGCCGAAACAGCACTTGCTAATCATCACTGACCGGCTGCTGGCGCTGGGCCAGATCAGCCGGGGGGCCATCAAGACCGATGAT GAGGATGAAGGGTTTCACAATGACGACGTGGGCCCCGATCAGGTGCTGTACCGATCCGTTGGAGGCGGCGATCAGGCCAGGCCTTGCCTGCGGCGCTTGC GTTACAGCGAACAGGTTCGAACAGCGCGGCAGGTGCAACGGGACTACACCTTCACTCATCCACAATACCGTCAGGAACACCAGGCTTACGACAATAGCAA CACCCATCAATCGCTGAACTATGAGCGCTTCGACTACCCCGGCCGATACAAGCGTGATGCGGTCGGGGTTCCGTTCACTGCCACCCGCCTCACGGCCCTG CGCCATGATGCACGCATTGCCGAAGTGGAAGGCGACGATGTGCGCCTGCAACCGGGGCTGAGCTTCACCCTCATCGAGCACCCGCGTGAAGACCTCAACG TGCACTGGCGCACGGTCAGCGTGCATCACGAAGGCACCCAGTTCACCAGCCTGCAGGAAGAGGCCGCCGACTCGCAGCAAGGCACCCGCTACAAACAGGA AGCATTGCTGGTTCCCGGCAGGACCGAATGGCGCCCGGCCCCCCTGCCCAAGCCACGCATCGACGGCCCGCACATGGCGACGGTGGTCGGGCCCAAGGGC GAGGAAATCTATTGCGACCAATGGGGCCGGGTGAAAGTGAGCTTTCCTTGGGACCGGGAAAGCGAAAACAACGAGTTCAGCTCCTGCTGGGTGCGCGTGT CGCAAGGTTGGGCGGGGGGCAGCTGGGGTTCGATGGCCATCCCGCGCATCGGCCAGGATGTGATCATCCAGTACGTCAACGCCGACCCGGACCAGCCGAT GATCACCGGGCGCACCTATTGCGGTAACCAGTTGCCGCCCTATGACCTGCCCGAGCACAAGACGCGCATGACCATCAAGAGCCAGACCCATAAAGGCGAA GGCTTCAACGAGCTGCGCTTCGAGGATGAACTGGGTCGGCAGGAGGTGTTCATTCATGCCGAGCGGGACCAGAACAACATCGTCAAGCACGACGAAACCA CACGCGTGGGTAACGATCGTACCGAACGCGTCGAACGAGACGAGACGATTTCGATCGGTCAGGACCGTCGCGAAGACATTGCCCGTGACGAGTCTGTTGG CATCGGCCAGAACCGGGTACACGAAATCGGCAACGACGACAGCCTGAGCATCGGCCGCAACCACAGGATCACCACAGGCAAGGACCGAATCGAACAGGTA GGGAACCACCGGCAGGACATCACCAAGGCAAACCACACGGTAGAAATCGGCGGCCACCGCGAACAGGTCGTTGCCGGTCACAGCACGTTGCAAACGGGCG AAGCCATCCGGCACACCACCAAGGTTTATGACATCCAGGTCAGCGAAAGCCTGACGATCCGCAGCCCCGCAGGGCTTTTGAGAGTAGACGGCGCCGGTAT AACGCTGGACGGCCTGGCGCTGGCCTTCAAAGGGCCTGTCAGCCAGCAGGCTACGGGTAGCAATCGCGTCACTTCAACGTCTGGCGTACCAGCGCCTGGC GAACCCATTTGCCTCAGCTGCCTGCTCAAGGCGATCGCCGACGGCCACACCATCATTCGCATGGAAGGAGCAAGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCCCAGCCCATTTGTCAGAGCAATGGTCGATGTGCTGCGGGCATCCGATCACTATCGCCTCAGCGCCATCGTGGAAATGGCCAATTTGACACCCAAGGT GCAAGAACAACTGACCGGGCACTACACGGGCCGCTGCTGGCCACTGCTGCAGCAAGCCCAGTTCAGCAACCTGCGGACAGCAGGCCCTTGGTTGTTCGGT TCGCGCCTCGGTTCCGATGTCTCGGCCCAGTACGACTTCCAGTGGCAACTTGAACAAGGTGCTGCTGGCGCCGTGTGCGGCTGGATAGTCAGCGCGCTTC CCGCTGCCCGGCTCGCCGGACACTTGAGCCACGCCAACATCGTCACGGGCACGGACGGCCACTCGTACCTGTTGCGCTTCCACACCGCCGCGGCTCTGCT AGTGCTGGACAGGCACCGTGAGCTGCCTGGGGTTAGCGAATGGCTGGCCCCCATCCATCACTGGTGGGCCCCCGTGGCGCACCCGAGCAAGCGGTTGTGG
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| Amino Acid Sequence |
>type VI secretion protein VgrG
MPSQSDLRFTFQPLVGRSEFEVVSFELDEAISSPFRLQLELVSFEDDVDFAQLLDKPVLFTLWQGERPLRYVHGLVSTFSQGETGFDRTRYRALVEPVLA RAGLRSNWRIFQQKTVPQILEIMLKRQGVNAYELKCLDPHQVREFCVQAGETDLDFMARLAAEEGIVYRFDHTPKQHLLIITDRLLALGQISRGAIKTDD EDEGFHNDDVGPDQVLYRSVGGGDQARPCLRRLRYSEQVRTARQVQRDYTFTHPQYRQEHQAYDNSNTHQSLNYERFDYPGRYKRDAVGVPFTATRLTAL RHDARIAEVEGDDVRLQPGLSFTLIEHPREDLNVHWRTVSVHHEGTQFTSLQEEAADSQQGTRYKQEALLVPGRTEWRPAPLPKPRIDGPHMATVVGPKG EEIYCDQWGRVKVSFPWDRESENNEFSSCWVRVSQGWAGGSWGSMAIPRIGQDVIIQYVNADPDQPMITGRTYCGNQLPPYDLPEHKTRMTIKSQTHKGE GFNELRFEDELGRQEVFIHAERDQNNIVKHDETTRVGNDRTERVERDETISIGQDRREDIARDESVGIGQNRVHEIGNDDSLSIGRNHRITTGKDRIEQV GNHRQDITKANHTVEIGGHREQVVAGHSTLQTGEAIRHTTKVYDIQVSESLTIRSPAGLLRVDGAGITLDGLALAFKGPVSQQATGSNRVTSTSGVPAPG EPICLSCLLKAIADGHTIIRMEGAS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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