Pseudomonas putida H, AC138_RS15780
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain H contig_3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGCGATTCTCAAGGACTACCGCGACCACCTGACCGGCGCGGTGGTGCACTGCTTCACCGGTGAGCGCGAGGCGCTGTTCGCCTACCTGGACCTGGACCT GCACATCGGCATTACCGGCTGGATCTGCGACGAACGCCGCGGCACTCACCTGCACCCGCTGGTGGGCAACATCCCTGAAGGCCGGCTTATGCTGGAAAGC GACGCGCCCTACCTGCTGCCGCGCAGCTTGCGGCCCAAGCCCAAGAGCGGGCGCAACGAGCCGGCGTTCTTGCCGGAGGTACTGCGCGAGGTGGCCTTGC ATCGCGGTGAATCAGCCGAGCACACGGCGGCGCATACCACGGCAACGGCGCGCGATTTTTTCCAGCTCCCCTGAGTCTCGCGTGTTGTTGCGGGGCGGGT GAACACAGTTGATATGCATCAACACATGTCCAGGTGGATGTGGGCACAATGATGGCACCTTGCCAATATTGTTTCCGCTCAACTCAGAGAAGACCTGCCC
|
|
| DNA Sequence for Gene |
>AC138_RS15780
ATGGGTGCCTGGCTTAGCAATGTTTCCCTGAAGTACAAATTCTGGGCCGTCAACGCAGTGGCCTTTGTCACCACCTTGCTGCTGGTGCTGTACGCCGTGC ACCTGGAGCAACGCGCACGTGCAGAGGCGGCTCAGGCCCAGGCGGCCGCGCAAGCCCAGTTGCTGGCCGCCTGGCCAGCCGGGCAAGCACTGCCACGCCC GGCCAACGTCATCAGTTGGTCAACCGGGCAAACGCCAACCTACGCCGGGGAGGCGCTCGATGCCCTGCGCAACGCCCAAGGCTGGGTAGCATTGCCGAGC GCCTGGATCCTCGGTGAAAACCCGCCGCGTGGCGCACAGGTATTGCGCAATGGCGACCAGCAGTTGGCTGTGCTGGCCCAGTCGCCCAGCCTGCGCCAGG TCTTCTTCGATCGCTTCAGCAATTACGCGGTGTGTGTGCTGATCCTGATGCTGGCCATGCTCGGCGCCTCGCAACTGCTGATCCGCTTCCTGCTCAGCCA ACTCAACACCCTCAAGGACGTGATGCTGCACGTGGAAAAAACCGGCGACCTGTCGGCCCGCGTACCGCTAGCCAGTGGCGACGAGGTCGGCCAGATGGCC GGAGCCTTCAACGCCATGCAGTCCACCTATCACCGCGTGGTCAGCACCGTCGCCCACAGCGCAGCACAGCTGGACTCGGGCGCTGCACGCCTGGCCGCCA GCATGAGCGACGTACGCCATGGCATGCTCGGCCAGCAGAGTGAAACCGACCAGGCCGCCACTGCCATCAACGAAATGTCGGCGACCGTGCACCACATTGC CCAGCACGCCGGTGCCACCCGCGATTTGTCACAAACCGCCGACACCTTGGCCGGCAGCGGCCAAGCGGTAGTCAGCCGAGTGCAGGATTCGATTTCCGGG CTTTCCAGCGGCGTGCAACAAACTGCCGAGATGATTCGACAACTAGCCGAGGACAGCCAGAAGATCAACGGTGTAGTCAGTGTGATCCACAGTATTGCCG AACAGACCAACTTGCTGGCGCTTAACGCTGCCATCGAAGCCGCGCGCGCCGGCGACCTAGGCCGTGGCTTTGCCGTGGTGGCCGATGAAGTGCGCAACCT GGCCAAACGCGTGCAAACCTCCACGGATGAGATCACCACCATGGTTTCGGCCCTGCAGTCGGGCACCCGCGATGCGGTGGAGTTCATGCAGGAGAGCTCG TACAAGGCCGACGACTGTGTGCGTCAGGCACAGGAAGCCGGTGAGGCGCTGGCTGAAATCACCGGTGCCGTGGCGCAGATGCGCGAAAGCAATACCCAGA TCGCTGTAGCGGCCGAGCAGCAAAGCCAGGTAGCCGAGGAAATGAACCGCGCGGTGGTCAGCATCCGCGATGTCACCGAGCGGACCGTGCAGCAGACGGT CGGTTCGGCGACCACCAGCAGCGAACTGGCGACCCTGGCCGGCGAACTGAACAAGGCCATTGGCCAGCTCAAGCTATAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCACCATAGCCAGGTTCGATTGGCCCCCGCTTGGGGGCCGCACTAAGCTTTGGGCATGACCGAGAGGAAATCCCCATGAGCAAACGCCTGCCCAATCTTC CCGCCTGGCAATGGCGCGGCTACCACCACAATCACCGCCACCCGGCCAACCTGGTGTTGCACCTGATCGCTGTGCCGTTGTTCATTCTGGGGACACTGCT GGTGCTGTCCGGTCTGTTTGGTTTCGACCTCGGCCAGATCGCGGTGGGTGTGATTGCCTTGATCGCAGCGTTGGGCCTGCAGCGCCAAGGCCACCGCCTT GAAGCCCAGCAACCCGAACCGTTCGCCAACCGCCAGGATGCCGTGCAGCGCTTACTGACCGAGCAGTTCATCACCTTTCCGCGCTTTGTGGTGAGCGGGG CCTGGTGGAGGGCCTGGCGGGAGCGGCACAAGCACCGGCACTGAGCCAGCTGCCGGAGCGCTGCTTGTGAGCAGCCTTGCAAGGGTCAGGCGAAAACGGT
|
|
| Amino Acid Sequence |
>chemotaxis protein
MGAWLSNVSLKYKFWAVNAVAFVTTLLLVLYAVHLEQRARAEAAQAQAAAQAQLLAAWPAGQALPRPANVISWSTGQTPTYAGEALDALRNAQGWVALPS AWILGENPPRGAQVLRNGDQQLAVLAQSPSLRQVFFDRFSNYAVCVLILMLAMLGASQLLIRFLLSQLNTLKDVMLHVEKTGDLSARVPLASGDEVGQMA GAFNAMQSTYHRVVSTVAHSAAQLDSGAARLAASMSDVRHGMLGQQSETDQAATAINEMSATVHHIAQHAGATRDLSQTADTLAGSGQAVVSRVQDSISG LSSGVQQTAEMIRQLAEDSQKINGVVSVIHSIAEQTNLLALNAAIEAARAGDLGRGFAVVADEVRNLAKRVQTSTDEITTMVSALQSGTRDAVEFMQESS YKADDCVRQAQEAGEALAEITGAVAQMRESNTQIAVAAEQQSQVAEEMNRAVVSIRDVTERTVQQTVGSATTSSELATLAGELNKAIGQLKL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|