Pseudomonas putida H, AC138_RS14605
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain H contig_25, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CATCCTGCAGTTCGGCAAGATCAACGTCGGCCTCAGTGGCTTGGAACCTGCCGGCCAATATGCACTGAAACTGACCTTCGACGACGGCCATGACAGCGGC TTGTTCACTTGGGAATACCTTGAGCAACTGTGCCTGCGCCAGGAACAACTGTGGGCAGAATACCTCGATGAGTTGCAAAAGGCCGGCAAATCCCGCGACC CAGCCGAATCTGTGGTCAAGCTCATGCTCTAGCGCAAGGCCTGCGGGGTTTAGAGCGCATTTTCTAAATTCATCTGTTTGAATGACTTGCAGACAGCCCA GTGAAGGGCTGTCTTGCGCATTACACGAAAGTCGGGTAACCAATGGGTGTGGCAAGTTCCCTGCATGACTTTGCAGGTCGGCAGAACCCACGCAGCACCG CTGTTCCTTATCACTGGTCACCCGAGTAGCAGTACCGGGCTCAGGGCTGTGCACCCGCCACAGCAACCGGTACTCGTCTCAGGACAACGGAGCGTCGTAG
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| DNA Sequence for Gene |
>AC138_RS14605
ATGAGTAACAAGAACAACGATGAGCTACAGCGGCAGGCCTCGGAAAACACCCTGGGGCTGAACCCGGTCATCGGCATCCGCCGCAAGGACCTGTTGAGCT CGGCACGCACCGTGCTGCGCCAGGCCGTGCGCCAACCGCTGCACAGCGCCAAGCATGTGGCTCACTTTGGCCTGGAGCTGAAGAACGTGTTGCTGGGCAA ATCCAGCCTGGCCCCGGACAGCGACGACCGTCGCTTCAATGACCCGGCCTGGAGCAACAACCCGCTGTACCGCCGCTACCTGCAAACCTACCTGGCCTGG CGCAAGGAGCTGCAGGACTGGGTGAGCAGCAGCGACCTGTCCCCCCAGGACATCAGCCGCGGCCAGTTCGTCATCAACCTGATGACCGAGGCCATGGCGC CGACCAATACCCTGTCCAACCCGGCTGCGGTCAAACGCTTCTTCGAAACCGGCGGCAAGAGCCTGCTCGATGGCCTGTCCAACCTGGCCAAGGACATGGT CAACAACGGCGGCATGCCCAGCCAGGTGAACATGGATGCCTTCGAAGTGGGCAAGAACCTGGGCACCAGCGAAGGCGCGGTGGTGTACCGCAACGATGTG CTGGAACTGATCCAGTACAGCCCCATCACCGAGCAGGTGCATGCCCGTCCGCTGCTGGTGGTGCCACCGCAGATCAACAAGTTCTACGTGTTCGACCTCA GCCCGGAAAAGAGCCTGGCGCGCTTCTGCCTGCGCTCGCAGCAGCAGACCTTCATCATCAGCTGGCGCAACCCGACCAAGGCCCAGCGTGAATGGGGCCT GTCCACCTACATCGATGCGCTGAAAGAAGCCGTCGACGCGGTGCTGTCGATTACCGGCAGCAAGGACCTGAACATGCTCGGCGCCTGCTCCGGTGGCATC ACTTGTACCGCACTGGTGGGCCACTATGCCGCCATTGGCGAGAACAAGGTCAACGCCCTGACCCTGCTGGTCAGCGTGCTGGACACCACCATGGACAACC AGGTTGCTTTGTTTGTCGACGAGCAGACCTTGGAGGCCGCCAAGCGCCACTCCTATCAGGCGGGCGTGCTGGAAGGCAGCGAAATGGCCAAGGTGTTCGC CTGGATGCGCCCCAACGACCTGATCTGGAACTACTGGGTAAACAACTACCTGCTCGGCAATGAGCCCCCCGTGTTCGACATCCTGTTCTGGAACAACGAC ACCACGCGCCTGCCGGCCGCCTTCCACGGCGACCTGATCGAAATGTTCAAGAGCAACCCGCTGACCCGCCCCGACGCCCTGGAAGTGTGCGGCACCGCGA TCGACCTGAAACAGGTCAAATGCGACATCTACAGCCTCGCCGGCACCAACGACCACATCACCCCCTGGCCGTCATGCTACCGCTCGGCACATCTGTTCGG CGGCAAGATCGAATTCGTACTGTCCAACAGCGGGCATATCCAGAGCATCCTCAACCCGCCGGGCAACCCGAAGGCACGTTTCATGACCGGTGCCGATCGC CCGGGTGACCCGGTGGCCTGGCAGGAAAATGCCATCAAGCATGCAGACTCCTGGTGGTTGCACTGGCAGAGTTGGCTGGGCGAGCGTGCCGGCGCGCTGA AAAAGGCACCGACCCGCCTGGGCAACCGTACCTATGCCGCCGGCGAAGCCTCCCCAGGCACCTACGTTCACGAGCGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTTACAGCGCCGTGGCGGCCTGCACGGCGCCACGGTGTTTACTTCACCCAAGAGTCACGTGCATGCCGCAACCCTATATTTTCAGGACCGTCGAGCTGGA CAACCAGTCCATCCGCACCGCTGTTCGCCCCGGCAAGCCGCACCTGACGCCGTTGCTGATCTTTAACGGCATCGGCGCCAACCTCGAGCTGGTGTTCCCG TTCATCGATGCACTTGACCCGGACCTGGAAGTCATCGCCTTTGATGTGCCCGGGGTCGGCGGCTCGTCTACGCCACGCAACCCGTACCGCTTCCCTGGGC TGGCCAAGCTGACCGCGCGGATGCTCGACTACCTCGACTACGGCCAGGTCAACGTCATCGGCGTGTCCTGGGGCGGCGCCCTGGCCCAGCAGTTTGCTCA CGATTACCCCGAGCGCTGCAAGAAGCTGGTGCTGGCCGCCACCGCTGCCGGTGCGGTAATGGTGCCAGGCAAGCCCAAGGTGCTGTGGATGATGGCCAGC
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| Amino Acid Sequence |
>poly(R)-hydroxyalkanoic acid synthase
MSNKNNDELQRQASENTLGLNPVIGIRRKDLLSSARTVLRQAVRQPLHSAKHVAHFGLELKNVLLGKSSLAPDSDDRRFNDPAWSNNPLYRRYLQTYLAW RKELQDWVSSSDLSPQDISRGQFVINLMTEAMAPTNTLSNPAAVKRFFETGGKSLLDGLSNLAKDMVNNGGMPSQVNMDAFEVGKNLGTSEGAVVYRNDV LELIQYSPITEQVHARPLLVVPPQINKFYVFDLSPEKSLARFCLRSQQQTFIISWRNPTKAQREWGLSTYIDALKEAVDAVLSITGSKDLNMLGACSGGI TCTALVGHYAAIGENKVNALTLLVSVLDTTMDNQVALFVDEQTLEAAKRHSYQAGVLEGSEMAKVFAWMRPNDLIWNYWVNNYLLGNEPPVFDILFWNND TTRLPAAFHGDLIEMFKSNPLTRPDALEVCGTAIDLKQVKCDIYSLAGTNDHITPWPSCYRSAHLFGGKIEFVLSNSGHIQSILNPPGNPKARFMTGADR PGDPVAWQENAIKHADSWWLHWQSWLGERAGALKKAPTRLGNRTYAAGEASPGTYVHER
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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