Pseudomonas putida H, AC138_RS14530
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain H contig_25, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCTCGCCCTGAACGCCGCCATCCAGGCCTCGCTGGCCGGTGAGGCCGGCCGCGGCTTTGCCGTGGTTGCCGACGAGGTGCAGCGCCTGGCCGAACGTTC ATCGTCTGCCACCCGCCAGATCGAGGCGCTGGTGCGTACCATTCAGGCCGATACCAACGAAGCGGTGATCTCCATGGAGCAGACCACCGCCGAAGTGGTG CGTGGCGCACGCCTGGCCCAGGATGCCGGGGTGGCGCTGGCCGAGATCGAAGGGGTGTCGCAGAACCTCGCCGACCTTATCCACAGCATCTCCGACGCTG CCCAGTTGCAGACCTCGTCGGCCGGGCAGATCTCCCACACCATGGCGGTGATCCAGCAGATTACCGCGCAAACCTCTGCCGGCTCCGGTGCCACTGCCGA CAGCATCCGCCACTTGGCCCGCATGGCCAGCGAGATGCGCCGTTCGGTGTCCGGTTTCACCCTGCCACCCCCTACCGAGCCGCGTTAAGGAATAGTGACC
|
|
| DNA Sequence for Gene |
>AC138_RS14530
ATGGCTTCTGCCGTAAGCCCCGAGCGTCACGAAACAGTGGCGCTGGCCTGGACCAAGGCCGCCATCCTCGATTGCCTGGGCCAGGCACGGCAGGCGCTGG AGCGCTTTGCCGGCGAGACGGGAGACCTGTCGATGATGGCTTTCGTGGTCGACAACCTGCACCAGGTGCACGGCTGCCTGCGCATGCTCGAACTGCGCGG CGCGACGCGCCTGGCGGAGGAGCTGGAGCTGTTTGCCAGGGCGTTGGCCGACGGCCAGGTCAGCCCCCGGGGTGATTGCCTGGGTGCATTGTTCCGCGGC CTGGAGCAGTTGCCCTCGTACCTGGAGCGGTTGCGCGGTGCTCGCCATGACCTGCCACTGGTGATGCTGCCGTTGCTCAACCAGCTGCGCGCCTGCCGGG GGGAGGAACCGCTGGCTCAGGCCAGCCTGATGACCGGCGCCGCCCAACGCTTTGCGGGTGACGATGACCTTGCCAACCTCGACCTGTCGCTGGGCAACTG GCGTGACCAACTGCAGGCCGGGTCGGGGCGCGATGCGCTGCGTTCGGTGGTGACTGCACTGTGCGATGACTTGATGCGCATCAAGGAGCGCCTGGACCAG TTCGGGCGCGGCGACCGTCAGCACCGCGAACAGCTCGATGCGCTGTTGGCGCCGTTGCGCCACGTGGCTGACACCCTGGCGGTACTGGGCTTTCAGCAAC CGCGGCGGGTGATCATCGACCAGGTGCTGGCGTTGCAGGCATTGGCTCAGGGCGAGCGGGCGGTGGACGACGCGGTGTTGATGGATGTGGCGGGGGCTCT GTTGTACGTGGAAGCCTCCCTGAACGGCATGGTCGGCCCTTTGGAGGAAAACGGCCAAGGCAGCCTGCCGGGCTCGGACCTGGCCGAGATACGCCAGCTG GTGCTGAATGAATCGCTGAACGTGTTGCAGCAGGCCAAGGATCTGATCGGCGATTACCTGGAGTCCGACTGGCCCCGGCAACGCCTGCAGCCCTTGCCGG GGCTGTTGCAGCAGATCCGCGGGGCATTGGCCATGTTGATGCTGCCGGCCGTGGCCGAGCTGTTTGTCGGCTGCGCAAGCTATGTGCAGCGTTGGTTGCA GCACCTGGAGGAAGAGCCGCCGATTGATGAGCTGACGCACTTGGCCGAGGCACTGAGCGCTGCCGAATGCTACCTGCAATGGCGGGCGGCAGACCCGCTG GCCGATGGCCAACCCTTTATCGAGATGGCACGGGCCAGCCTGGCGGCGCTGGGTGTGCAGTGCGTGGTGGTCGGGGCCAGCCCAGACCAGGACGGCAATG GCGATGGCATCGATGATGAGCTTCGCCAAGTGTTCCTTGACGAGGCGGGCGAACTGCTGCCGGAAATCGAGCGCCACTGGCTGCGCTGGCGTGCCGACAA CCAGCAGCGCGAGGCACTGGGTGAAGTGCGTCGCGCGCTGCATACACTCAAAGGCAGCGGCCGCATGGTCCATGCCGAGGCGGTGGCTGAACTGGCCTGG GGCGCCGAGCACCTGCTGAACCGGGTGCTCGAGGGCCGCAGCGTGCTCAGTCCGGAAGGGGTTGTAGCGCTGCAGCAGGTGTTCGTTCACCTGCCTGACC TGCTGGCCGACTTTGCCGCCGGCCAGTTGCCGCAACTGACTGAAATCGAGCAATTGGCCGGGCATCTGCACAGCCTGGCCGAAAACGATGCCCCGGCGGC TGCCGGTGTCGATGGCCTCGATCCGCAGTTGCTGGGCATTTTTCGCAGCGAGGCGCAGGGCCATCTGGCCAGCCTTGAGGTTTATCTGCAAAGCACCGGC GGCCACGACACGCCGGTCAGCGATGACTTGCAGCGTGCCTTGCACACACTCAAAGGCAGTGCCGCCATGGCCGGTGTGATGCCGGTGGCCGAACTGGCCA CTGCCTTCGACCGCCTGGCCCGTGAGTACAAGGGCCATCAACTGCCACTGCAAATGGCCGAAATGGAATGGCTGGAGGCTGCGCGGTCGTTGTTCCATCT GGGCTTGGCGCAACTCGATAGCACGCCCCTGGCCGCCATCCCCGGTGCCGCGGAACTGATCGAGCAGGTTGGCCAGGCCGTGGACCGCCGCCTGGCCAGC CTGCATGAAGACCCGCACCATGCCGGCCGCAGCAAGCGTGATCCGCAGTTGGTCGCCAGCTTCCTGGCCCATGCCATGGACATCCTGCTCGATGCAGAGA CGTTGTTGTCGCGCTGGCAGCAACAGCCCGGCCAGCGTGACGCTCTGGATAACCTGCTCGACCAGATGACCACCCTGGGGCACGCTGCGCACCTGGCCGA CCTGTGGCAGATGGATGACGTGTGCGAGGCGTTGCTGGACCTGTATGGCGCTGTGGAGGAGGGCAGCCTGCCTGCCGATGCCCGCTTCTTCAGCCAGGCG CAGCGGGCCCATGAAGCCTTGCTGGACATGCTGGACGAAGTGGCGGCCGGGCAGGATATTCCACCGCGCCCGGAGCTGGTCGACCGTCTGCGCAACCTGC TGGACCAGGCCCTGGCGCCAGATGCCACCGGCCTGGTGGGCATCGATACGGTCACACCACTGCACCCGGACATGGACCTATCCGATACCTTGGGGTTGCC ACGCCCGCCGTTGCAGCCGCAGGTGGCCGAGCCGCTTGCCGAGGAGCCGGAAAGCCCCGGCGAAGAGCTGCTGGAAGTGTTCCTGGAAGAAAGCTCGGAC ATCGTCGAGAGCGCCGCGGCGGCCCTGGCGCGCTGGCAGGCCGACCCGCGCAGCAGCGTCGAGGTGGACAACCTGATGCGCGACCTGCACACCCTCAAAG GCGTGGCGCGCATGGTCGAAATCACCCCGATCGGCGACCTGGCCCACGAACTGGAGTTCCTCTACGAGCTGTTGGCTGCGGGTAGATTGCCGCCAAGTGC GCCACTGTTCGCACTGCTGCAGAACTGCCACGACCGGCTGGCGCATATGCTTGACGCTGTGCGTCTGGGGCAGCCGCTGCATGCCGCTACAGCGCTGATC GACTACATTCGCAACTTCAGCAGTGCCGCACTGACAGACAGTGCCGCGGGCCAGGGGCCGCCAGAAGCTGCCACCGCCGAAATACCGGCAGCAGCGCCAG AGCGGGCACCGGGTGACATGGTCAAGGTCGACGCCGAGCTGCTCGACGACCTGGGTAACCTGGCAGGCGAGCACTCGATCATCCGGGGGCGCATCGAGCA ACAGGTCAACGACGCGCAGTTCGCCCTCAACGAGATGGAGACCACACTCGAGCGCATGCGTGATCAGTTGCTGCGTCTGGATGTCGAGACCCAGGGGCGA ATCTCCAGCCGGCAGCAGTTCGAAGGCGATGCCTATGACGACTTCGACCCGCTGGAAATGGACCGCCACTCCCAGCTGCAGCAGCTGTCACGGGCCCTCT TCGAGTCTGCCTCGGACCTGCTCGACCTGAAGGAGACCCTGGCTCAGCGCGCTCAGGAGGCCTACAGCCTGCTGCAACAGCAGGCGCGGGTGAACAGCCA GTTGCAGGAGGGCCTGACGGCCACCCTGATGGTGCCGTTCGAGCGCCTGGTGCCGCGCTTGCAGCGCGTGGTGCGGCAAGTGGCCAGCGAGCTGGGCAAG CAGGTGGAACTGGTGGTTGGCAATGCCGAGGGCGAACTGGACCGCAGCGTGCTGGAACGTATGGTGGCGCCGCTGGAGCATATGCTGCGCAACGCCGTTG ACCACGGCCTGGAAAGCCGCGCAATGCGCCTGGCCGCCGGCAAGCCGGAGCAGGGCACCATTCACCTGAATTTGCTGCATGAGGGCGCCGATATCGTCAT CGAAATGACGGATGATGGTGCCGGCGTGCCCCTGGAGGCGGTGCGGCGCAAGGCCATCAAGCGCGGCCTGCTGGACCCGCAGGCGCAGTTGAGTGACCAC GAGATCCTGCAGTTCATCCTGCGGCCAGGCTTTTCCACCGCCGAAAAGATCACCCAGATTTCCGGGCGCGGGCTGGGCATGGATGTGGTGCACGAGGAGG TCAAGCAACTGGGTGGCTCGATGAGTATCGAGTCGGCGCAGGGCAAGGGGGCGCGTTTCCTGATCCGCCTGCCGTTCACCGTGTCGATCAACCGTGCGCT GATGGTGCACCTGGGCGAAGAGCAATACGCCATTCCGCTCAATACCATCGAGGGCATCGTCCGCGTGCCACCTGCCGAGCTTGCGGCGTGCTACCAGCTG GACTCGCCGCGCTATGTCTATGCCGGCCACGAATACGAGCTGCGCTACCTGGGCGAGTTGCTGCAAGGCCTGCCGCGCCCCGCGCTGCTGGGGCAGAGCG TGCCGTTGCCGGTGCTGCTGGTGCATTCCAAGGAGCAGTCGTTCGCCATCCAGGCCGACAGCCTGTCGCCCAGCCGCGAGATCGTGGTGAAAAGCCTGGG GCCGCAGTTTGCCGCGGTTGCCGGGTTATCGGGGGCGACACTGCTGGGCGATGGCCGGGTGGTGCTGATTCTTGACCTGCTGGGCCAGCTGCGCGGCCAG CAGCGACGGCTGGCCCGCTTGCCTGGTGGCGGTAGCCAACGCCAGTTGCTTGGCCCGGCGCCGCGCCGTGCCTTGCTGGTGATGGTGGTGGACGATTCGG TAACCGTACGCAAGGTAACCAGCCGCCTGCTGGAGCGCCACGGCATGAGCGTGCTTACGGCCAAGGATGGTGTAGATGCCATGGCCCTGCTGGAAGAGCA CCGGCCCGACGTGTTGTTGCTGGACATCGAAATGCCGCGCATGGACGGCTTCGAGGTGGCCACACGCATCCGCCGTGACGCACGGCTGAAAGACTTGCCG ATCATCATGATCACCTCGCGTACCGGGCAGAAGCACCGGGACCGCGCCATGGCCATCGGCGTCAACGAATACCTGGGCAAGCCGTACCAGGAATCGCTGC TGTTGCAGAGCATCGCCCATTGGAGCCAGGCCCATGCTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACTGATTTCCGGCCAGCGCAGCAGCCTGACCGGGCTGTTGCTGCCGTTGGGCGACCGCACGCTGGTGTTGCCCAACGTGGCGGTGGCCGAGTTGAGCGGG CAGCGTAACCTGGTGTGCCAGCATGGCGACCCCGCCTGGCACCTGGGGTGGATCGACTGGCGTCAGCAACGCCTGCCGTTGATCGGTTTCGAGGCCGCGT GCGGTGGTGAGACGCCGTGCGGCGAGCGGGCTCGCGTGGTGGTGCTCAATGCGTTGGGCGATACCGGTTTGCGCTACCTGGCGCTGTTGCTGCAGGACAT TCCGCGCTCGTGCAAGCTCGACAGCCAGCTGAACTACGTGGATGTGGCGCTGGGCAGGTTGGAGCTGGCAGCGGTGCAGGTGGGTGAGCAGGTGGCGCGG GTACCGGACCTGGTCGCATTGGAAAGGCTGGTGCGTGACGCGGATCTGCAACCTGACCTTGGTTAGGATGTGAGGCGCAGGGCCTGGTGGTCTGGAGTGG
|
|
| Amino Acid Sequence |
>chemotaxis protein CheA
MASAVSPERHETVALAWTKAAILDCLGQARQALERFAGETGDLSMMAFVVDNLHQVHGCLRMLELRGATRLAEELELFARALADGQVSPRGDCLGALFRG LEQLPSYLERLRGARHDLPLVMLPLLNQLRACRGEEPLAQASLMTGAAQRFAGDDDLANLDLSLGNWRDQLQAGSGRDALRSVVTALCDDLMRIKERLDQ FGRGDRQHREQLDALLAPLRHVADTLAVLGFQQPRRVIIDQVLALQALAQGERAVDDAVLMDVAGALLYVEASLNGMVGPLEENGQGSLPGSDLAEIRQL VLNESLNVLQQAKDLIGDYLESDWPRQRLQPLPGLLQQIRGALAMLMLPAVAELFVGCASYVQRWLQHLEEEPPIDELTHLAEALSAAECYLQWRAADPL ADGQPFIEMARASLAALGVQCVVVGASPDQDGNGDGIDDELRQVFLDEAGELLPEIERHWLRWRADNQQREALGEVRRALHTLKGSGRMVHAEAVAELAW GAEHLLNRVLEGRSVLSPEGVVALQQVFVHLPDLLADFAAGQLPQLTEIEQLAGHLHSLAENDAPAAAGVDGLDPQLLGIFRSEAQGHLASLEVYLQSTG GHDTPVSDDLQRALHTLKGSAAMAGVMPVAELATAFDRLAREYKGHQLPLQMAEMEWLEAARSLFHLGLAQLDSTPLAAIPGAAELIEQVGQAVDRRLAS LHEDPHHAGRSKRDPQLVASFLAHAMDILLDAETLLSRWQQQPGQRDALDNLLDQMTTLGHAAHLADLWQMDDVCEALLDLYGAVEEGSLPADARFFSQA QRAHEALLDMLDEVAAGQDIPPRPELVDRLRNLLDQALAPDATGLVGIDTVTPLHPDMDLSDTLGLPRPPLQPQVAEPLAEEPESPGEELLEVFLEESSD IVESAAAALARWQADPRSSVEVDNLMRDLHTLKGVARMVEITPIGDLAHELEFLYELLAAGRLPPSAPLFALLQNCHDRLAHMLDAVRLGQPLHAATALI DYIRNFSSAALTDSAAGQGPPEAATAEIPAAAPERAPGDMVKVDAELLDDLGNLAGEHSIIRGRIEQQVNDAQFALNEMETTLERMRDQLLRLDVETQGR ISSRQQFEGDAYDDFDPLEMDRHSQLQQLSRALFESASDLLDLKETLAQRAQEAYSLLQQQARVNSQLQEGLTATLMVPFERLVPRLQRVVRQVASELGK QVELVVGNAEGELDRSVLERMVAPLEHMLRNAVDHGLESRAMRLAAGKPEQGTIHLNLLHEGADIVIEMTDDGAGVPLEAVRRKAIKRGLLDPQAQLSDH EILQFILRPGFSTAEKITQISGRGLGMDVVHEEVKQLGGSMSIESAQGKGARFLIRLPFTVSINRALMVHLGEEQYAIPLNTIEGIVRVPPAELAACYQL DSPRYVYAGHEYELRYLGELLQGLPRPALLGQSVPLPVLLVHSKEQSFAIQADSLSPSREIVVKSLGPQFAAVAGLSGATLLGDGRVVLILDLLGQLRGQ QRRLARLPGGGSQRQLLGPAPRRALLVMVVDDSVTVRKVTSRLLERHGMSVLTAKDGVDAMALLEEHRPDVLLLDIEMPRMDGFEVATRIRRDARLKDLP IIMITSRTGQKHRDRAMAIGVNEYLGKPYQESLLLQSIAHWSQAHA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|