Pseudomonas putida H, AC138_RS13210
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain H contig_24, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCAATCAGGCTGGCCTGTTCCTGCCAACGCGCCAGCAGTACCAGGTTCACCTGCACGGCCAGGCCGAACCAGCCCAGCACCGCCATGCCGGTCAGCCAA GGGCGACGCGACATGTCAGGCCTGACGCTGCAGCTTCACGTACAGCTGCTCGACCTTCTCCCGCGCCCACGGTGTTTTGCGCAGGAACGTCAGGCTCGAC TTGATGGTCGGGTTGCTCTTGAAGCAGCGCACATCGATGCGCTCGGCCAGGCCATGCCATTGGTAATGCGCCACCAGCTCGGTGAGGATCTGTTCAAGGG TCTTGCCGTGCAGCGCGTTGTGTTGGGCCGTGCTCATGCTGTGCTCCGTAGGAAAGATGCGCACCTTACACGAGTGTAGTGGTGGGAGGGATCCGTCGAG TCGACAGAAAAATCGCTGGTCAGAGGCAAAACCTCTGTGATGGAATAGTTATGTTATGTTGTAACACTAAAAAGCATCTGCCAAGGAACGCCCCATCCCC
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| DNA Sequence for Gene |
>AC138_RS13210
ATGCTGTACACACCGCTTCGCCTTTCCCCCCTTGCCGTCGCACTCTGGCTGGCTGCATCCCCCAGCCAGGCCGTAGAACTTGAGCCGCAGGTCATCACCG CCAACCCGCTGGGTAACCGCCAACTGGCCGCCCCCAGCACCGTGCTCGAAGGCGACAACCTGCTGCAACAGCAGCACGGCAGCCTGGGTGAAACCCTTAA CAAGCAGCCCGGTGTCGCCTCTACCTGGTTCGGCCCTGGCGCCAGCCGCCCGGTGATCCGCGGCCTGGATGGCGACCGCATTCGTATCCTGCGCAATGGC GTCGGTGCCCTGGATGCCTCGTCGCTGTCCTACGATCATGCCGTGCCGCTGGACCCGGTAACCGTCGAGCGCGTCGAAATCGTCCGTGGCCCGGCCGCCC TGCTTTACGGCGGCAACGCCATTGGCGGGGTGGTCAACACCTTCGACAACCGCATCCCGGACTCGCCGATCGAGGGCATCCACGGTGCCGGTGAACTGCG TTACGGCGGCGCCGACACCACTCGCAGCAGCGCCGGCAAGCTGGAGGCCGGCGACGGCGCCTTCGCCCTGCACCTGGATGCCAACAGCCGCCAGTTCAAC GACCTGCGCATCCCGGGCTATGCACGCAGCGCCAAGGTGCGCGATGCCGACGAGCCCGGCAGCAAACACCGCCTGGAAAACAGCGACGGTCGCCAGGACG GCGGCGCAATCGGTGGTGCCTACCACTGGGACCACGGCTACGCCGGCCTGTCGTACAGCCGCTACGACAGCAACTACGGCTCGGTGGCCGAGTCCGGCGT GCGCCTGGACATGAAACAGGATCACTACGCCTTCGCCTCCGAACTGCGCGATCTCGACGGCCCGTTCAGCTCGGTCAAGGTAGATGCTGGTTACACCGAC TACGAACACAGCGAAATCGAGGAAGGCGAGGTCCATACCACCTTCAAGAACAAGGGCTACGAAGCCCGCATCGAAGCCCGTCACCAGCCGCTCGGGCCGA TTGAAGGGGTGATCGGTGCCCAGGTCAGCCGCAACGAATTCTCCGCCCTGGGCGAGGAAGCCTTCGTCCCGCACACCGATACCGACAGCCTGGCGCTGTT CATGCTGGAGCAGTGGCAAGCCACCGAACGCCTGAACCTGAGCCTGGGCGCGCGCATGGAGCACACCCGCGTAGACCCGGACGCCAAAGGCAACGAGAAC TTCGTCGACGCCGACAGCGCCAGCAGCTTCAACGCCTTCAGCCTGTCGTCGGGGGCTGTGTACCAGCTCGACCCAATCTGGTCGCTGGCCGCCAACCTCG GCTACACCGAGCGCGCCCCTACCTTTTACGAGCTGTACGCCAATGGCGCGCACGTAGCCACCGGCGCGTTTGAAGTCGGTGACGCCAGCCTGAACAAGGA AAAGGCCATTTCCGCCGACCTGGCGCTGCGCTTCGACAACGGCACCCACAAGGGCAGTGTTGGGTTGTTCTACAGCCACTTTCGCAACTACATCGGCCTG ATTGGCACCGGCAACACCCGCGAAGGCGAGCATGACCATGAGGAGGAGGATCACGATCATGATCATGATCATGAGGGCTTCCCGGAATACCAGTACCAAG GCGTGCGGGCGCGCTTCTACGGCATCGAGGCCCAGGACCGCTGGCAGTTGGCCGAGAACCGTTACGGCAGCTTCGCGCTGGAGTTGTCCGGTGACTATAC CCGAGCCAAGAACCTCGACAGTGGCGAGCCACTGCCCCGCATCGCCCCGCTGCGCCTGAACAGCGGCCTGGTCTGGGAGCTGGACCGCTGGCAGGCGCGG GTAGACGTGCAGCACGCTGCGTCGCAGCACCGCAAACCCGCCAACGAAACCAGCACCGATGGCTACACCACCTTGGGCGCGAGCGTTGGCTACCGCTTCG ACATTGGCCAGAGCCAGTGGCTGGCGTTTGTGCGCGGCGAAAACCTGACCGACCAGACCGTGCGCTATGCCAGTTCGATCCTGCGCGATATCGCACCGGC GCCGGGGCGTAGCGTGGAAGTCGGGTTGCGTACCACCTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCACAAGCGACGAAGATCGGTGTAGGAACGGGTTCACCCGCGAATACGATGGTAGGGCAACCGGCGCATTCGCGGGTGAACCCGCTCCTACACCTGCCT CGATTAATGACGACTGTTGCCCGTTCAACAACAATCCTCTGCGACAATTTGTCTTTTTTCTTATAACTTCCCCTATATCCTCCCCGCCGCAAGCTGAAAC GCTTCATCGAACAATCTTGTCGCCATATCCATTGAGGGGCCCGCCCTTCGATGCGCTTGCCGTTTTTTTCAATAATCAAAAGATAGCGCTATCTCATGTT CCAACTGCCTAAAACCTGCTACATCGGCCTGGCCCTCAGTGCCTTGGCAACCCCCGCCGGCGCCAGCGAAATGTTCGCCAGCGACTCCCCTTGGATGCTC GGCGACTGGGGTGGAACCCGCAGCGAACTGCTGGAAAAGGGCTACGACTTCACCCTTGGCTACACCGGCGAGATGGGCAGCAACCTGCACGGCGGCTACG
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| Amino Acid Sequence |
>TonB-dependent receptor
MLYTPLRLSPLAVALWLAASPSQAVELEPQVITANPLGNRQLAAPSTVLEGDNLLQQQHGSLGETLNKQPGVASTWFGPGASRPVIRGLDGDRIRILRNG VGALDASSLSYDHAVPLDPVTVERVEIVRGPAALLYGGNAIGGVVNTFDNRIPDSPIEGIHGAGELRYGGADTTRSSAGKLEAGDGAFALHLDANSRQFN DLRIPGYARSAKVRDADEPGSKHRLENSDGRQDGGAIGGAYHWDHGYAGLSYSRYDSNYGSVAESGVRLDMKQDHYAFASELRDLDGPFSSVKVDAGYTD YEHSEIEEGEVHTTFKNKGYEARIEARHQPLGPIEGVIGAQVSRNEFSALGEEAFVPHTDTDSLALFMLEQWQATERLNLSLGARMEHTRVDPDAKGNEN FVDADSASSFNAFSLSSGAVYQLDPIWSLAANLGYTERAPTFYELYANGAHVATGAFEVGDASLNKEKAISADLALRFDNGTHKGSVGLFYSHFRNYIGL IGTGNTREGEHDHEEEDHDHDHDHEGFPEYQYQGVRARFYGIEAQDRWQLAENRYGSFALELSGDYTRAKNLDSGEPLPRIAPLRLNSGLVWELDRWQAR VDVQHAASQHRKPANETSTDGYTTLGASVGYRFDIGQSQWLAFVRGENLTDQTVRYASSILRDIAPAPGRSVEVGLRTTF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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